Strain Fitness in Sinorhizobium meliloti 1021 around SMa2291

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2287 and SMa2289 are separated by 140 nucleotidesSMa2289 and SMa2291 are separated by 1 nucleotidesSMa2291 and SMa2293 are separated by 75 nucleotides SMa2287: SMa2287 - LysR family transcriptional regulator, at 1,271,938 to 1,272,870 SMa2287 SMa2289: SMa2289 - hypothetical protein, at 1,273,011 to 1,273,403 SMa2289 SMa2291: SMa2291 - dehydrogenase, at 1,273,405 to 1,274,517 SMa2291 SMa2293: SMa2293 - beta lactamase transcriptional activator, at 1,274,593 to 1,275,477 SMa2293 Position (kb) 1273 1274 1275Strain fitness (log2 ratio) -2 -1 0 1 2at 1272.423 kb on - strand, within SMa2287at 1272.516 kb on - strand, within SMa2287at 1272.889 kb on + strandat 1272.890 kb on - strandat 1272.946 kb on + strandat 1272.946 kb on + strandat 1272.946 kb on + strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1272.947 kb on - strandat 1273.048 kb on - strandat 1273.279 kb on + strand, within SMa2289at 1273.549 kb on + strand, within SMa2291at 1273.552 kb on + strand, within SMa2291at 1273.552 kb on + strand, within SMa2291at 1273.553 kb on - strand, within SMa2291at 1273.604 kb on - strand, within SMa2291at 1273.604 kb on - strand, within SMa2291at 1273.604 kb on - strand, within SMa2291at 1273.618 kb on + strand, within SMa2291at 1273.619 kb on - strand, within SMa2291at 1273.631 kb on - strand, within SMa2291at 1273.765 kb on + strand, within SMa2291at 1273.996 kb on + strand, within SMa2291at 1273.997 kb on - strand, within SMa2291at 1273.997 kb on - strand, within SMa2291at 1274.515 kb on + strandat 1274.515 kb on + strandat 1274.516 kb on - strandat 1274.518 kb on + strandat 1274.518 kb on + strandat 1274.571 kb on + strandat 1274.571 kb on + strandat 1274.571 kb on + strandat 1274.594 kb on + strandat 1274.594 kb on + strandat 1274.594 kb on + strandat 1274.596 kb on + strandat 1274.596 kb on + strandat 1274.597 kb on - strandat 1274.597 kb on - strandat 1274.597 kb on - strandat 1274.652 kb on + strandat 1274.694 kb on - strand, within SMa2293at 1274.903 kb on + strand, within SMa2293at 1274.904 kb on - strand, within SMa2293at 1274.912 kb on - strand, within SMa2293at 1274.912 kb on - strand, within SMa2293at 1275.087 kb on + strand, within SMa2293at 1275.087 kb on + strand, within SMa2293at 1275.087 kb on + strand, within SMa2293at 1275.088 kb on - strand, within SMa2293at 1275.227 kb on - strand, within SMa2293at 1275.251 kb on - strand, within SMa2293at 1275.251 kb on - strand, within SMa2293at 1275.262 kb on + strand, within SMa2293at 1275.388 kb on + strand, within SMa2293

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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1,272,423 - SMa2287 0.52 +0.3
1,272,516 - SMa2287 0.62 -0.7
1,272,889 + +0.2
1,272,890 - -0.4
1,272,946 + +0.1
1,272,946 + +1.5
1,272,946 + +0.1
1,272,947 - -0.9
1,272,947 - +0.9
1,272,947 - +0.1
1,272,947 - -0.2
1,272,947 - -0.1
1,272,947 - +1.5
1,272,947 - -0.3
1,273,048 - +0.4
1,273,279 + SMa2289 0.68 -0.5
1,273,549 + SMa2291 0.13 +1.5
1,273,552 + SMa2291 0.13 +0.2
1,273,552 + SMa2291 0.13 -0.8
1,273,553 - SMa2291 0.13 +0.3
1,273,604 - SMa2291 0.18 +0.4
1,273,604 - SMa2291 0.18 +0.3
1,273,604 - SMa2291 0.18 -0.4
1,273,618 + SMa2291 0.19 +0.5
1,273,619 - SMa2291 0.19 +0.8
1,273,631 - SMa2291 0.20 +0.1
1,273,765 + SMa2291 0.32 +0.1
1,273,996 + SMa2291 0.53 +0.8
1,273,997 - SMa2291 0.53 +0.6
1,273,997 - SMa2291 0.53 +0.5
1,274,515 + -2.4
1,274,515 + +0.8
1,274,516 - +0.4
1,274,518 + +0.4
1,274,518 + +0.8
1,274,571 + +0.4
1,274,571 + -0.2
1,274,571 + +2.2
1,274,594 + -0.6
1,274,594 + +0.6
1,274,594 + -0.4
1,274,596 + -0.4
1,274,596 + +0.6
1,274,597 - +0.1
1,274,597 - +0.3
1,274,597 - +0.1
1,274,652 + +0.2
1,274,694 - SMa2293 0.11 -0.2
1,274,903 + SMa2293 0.35 -0.9
1,274,904 - SMa2293 0.35 +0.1
1,274,912 - SMa2293 0.36 +0.8
1,274,912 - SMa2293 0.36 -0.8
1,275,087 + SMa2293 0.56 -0.0
1,275,087 + SMa2293 0.56 -0.7
1,275,087 + SMa2293 0.56 +0.1
1,275,088 - SMa2293 0.56 +0.4
1,275,227 - SMa2293 0.72 -0.6
1,275,251 - SMa2293 0.74 -0.7
1,275,251 - SMa2293 0.74 -0.2
1,275,262 + SMa2293 0.76 -0.0
1,275,388 + SMa2293 0.90 -0.1

Or see this region's nucleotide sequence