Strain Fitness in Sinorhizobium meliloti 1021 around SMa0775

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0774 and SMa0775 are separated by 325 nucleotidesSMa0775 and SMa0776 are separated by 405 nucleotides SMa0774: SMa0774 - NoeB host specific nodulation protein, at 420,721 to 422,382 SMa0774 SMa0775: SMa0775 - hypothetical protein, at 422,708 to 423,034 SMa0775 SMa0776: SMa0776 - TRm23b IS ATP-binding protein, at 423,440 to 424,177 SMa0776 Position (kb) 422 423 424Strain fitness (log2 ratio) -2 -1 0 1 2at 421.713 kb on + strand, within SMa0774at 421.851 kb on + strand, within SMa0774at 421.864 kb on + strand, within SMa0774at 421.910 kb on - strand, within SMa0774at 421.915 kb on - strand, within SMa0774at 421.947 kb on - strand, within SMa0774at 422.094 kb on + strand, within SMa0774at 422.094 kb on + strand, within SMa0774at 422.095 kb on - strand, within SMa0774at 422.122 kb on - strand, within SMa0774at 422.138 kb on - strand, within SMa0774at 422.273 kb on + strandat 422.274 kb on - strandat 422.276 kb on + strandat 422.315 kb on - strandat 422.346 kb on + strandat 422.346 kb on + strandat 422.346 kb on + strandat 422.346 kb on + strandat 422.347 kb on - strandat 422.347 kb on - strandat 422.347 kb on - strandat 422.347 kb on - strandat 422.430 kb on - strandat 422.430 kb on - strandat 422.559 kb on - strandat 422.578 kb on - strandat 422.589 kb on + strandat 422.616 kb on + strandat 422.616 kb on + strandat 422.619 kb on - strandat 422.622 kb on + strandat 422.679 kb on + strandat 422.847 kb on - strand, within SMa0775at 422.927 kb on - strand, within SMa0775at 422.990 kb on + strand, within SMa0775at 422.991 kb on - strand, within SMa0775at 423.140 kb on + strandat 423.140 kb on + strandat 423.140 kb on + strandat 423.140 kb on + strandat 423.307 kb on + strandat 423.549 kb on - strand, within SMa0776

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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421,713 + SMa0774 0.60 +1.7
421,851 + SMa0774 0.68 -1.3
421,864 + SMa0774 0.69 +0.1
421,910 - SMa0774 0.72 +2.7
421,915 - SMa0774 0.72 -0.1
421,947 - SMa0774 0.74 -0.6
422,094 + SMa0774 0.83 +1.0
422,094 + SMa0774 0.83 -0.1
422,095 - SMa0774 0.83 -0.3
422,122 - SMa0774 0.84 -1.0
422,138 - SMa0774 0.85 +0.1
422,273 + -1.6
422,274 - +1.3
422,276 + +1.7
422,315 - +0.7
422,346 + -0.7
422,346 + -0.3
422,346 + +0.0
422,346 + -0.9
422,347 - -0.8
422,347 - +0.0
422,347 - -0.5
422,347 - -1.0
422,430 - -0.6
422,430 - +0.6
422,559 - -2.5
422,578 - +0.0
422,589 + -0.1
422,616 + -1.5
422,616 + +0.4
422,619 - -0.9
422,622 + +0.7
422,679 + -0.1
422,847 - SMa0775 0.43 +0.1
422,927 - SMa0775 0.67 -0.2
422,990 + SMa0775 0.86 -1.9
422,991 - SMa0775 0.87 -0.9
423,140 + -0.3
423,140 + +1.4
423,140 + +0.0
423,140 + +0.2
423,307 + -1.3
423,549 - SMa0776 0.15 +0.1

Or see this region's nucleotide sequence