Experiment: 3-octanone 2.655166667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0050 and SMa0052 overlap by 10 nucleotides SMa0052 and SMa0056 are separated by 581 nucleotides SMa0056 and SMa0058 are separated by 63 nucleotides
SMa0050: SMa0050 - hypothetical protein, at 27,295 to 27,516
SMa0050
SMa0052: SMa0052 - hypothetical protein, at 27,507 to 27,713
SMa0052
SMa0056: SMa0056 - dehydratase/enolase, at 28,295 to 29,428
SMa0056
SMa0058: SMa0058 - N-acylglucosamine 2-epimerase, at 29,492 to 30,688
SMa0058
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.310 kb on + strand at 27.435 kb on + strand, within SMa0050 at 27.435 kb on + strand, within SMa0050 at 27.435 kb on + strand, within SMa0050 at 27.436 kb on - strand, within SMa0050 at 27.599 kb on + strand, within SMa0052 at 27.599 kb on + strand, within SMa0052 at 27.600 kb on - strand, within SMa0052 at 27.621 kb on + strand, within SMa0052 at 27.621 kb on + strand, within SMa0052 at 27.645 kb on - strand, within SMa0052 at 27.782 kb on + strand at 27.783 kb on - strand at 27.797 kb on + strand at 27.844 kb on - strand at 27.888 kb on - strand at 27.966 kb on + strand at 27.966 kb on + strand at 27.966 kb on + strand at 27.966 kb on + strand at 28.027 kb on + strand at 28.027 kb on + strand at 28.028 kb on - strand at 28.028 kb on - strand at 28.274 kb on + strand at 28.274 kb on + strand at 28.296 kb on + strand at 28.296 kb on + strand at 28.297 kb on - strand at 28.371 kb on + strand at 28.371 kb on + strand at 28.371 kb on + strand at 28.410 kb on + strand, within SMa0056 at 28.430 kb on + strand, within SMa0056 at 28.633 kb on + strand, within SMa0056 at 28.746 kb on + strand, within SMa0056 at 28.821 kb on + strand, within SMa0056 at 28.878 kb on + strand, within SMa0056 at 28.878 kb on + strand, within SMa0056 at 28.943 kb on + strand, within SMa0056 at 28.944 kb on - strand, within SMa0056 at 29.022 kb on + strand, within SMa0056 at 29.023 kb on - strand, within SMa0056 at 29.150 kb on - strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.151 kb on + strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.152 kb on - strand, within SMa0056 at 29.223 kb on + strand, within SMa0056 at 29.324 kb on - strand at 29.493 kb on + strand at 29.494 kb on - strand at 29.526 kb on + strand at 29.526 kb on + strand at 29.527 kb on - strand at 29.527 kb on - strand at 29.625 kb on + strand, within SMa0058 at 29.625 kb on + strand, within SMa0058 at 29.626 kb on - strand, within SMa0058 at 29.673 kb on + strand, within SMa0058 at 29.754 kb on + strand, within SMa0058 at 29.755 kb on - strand, within SMa0058 at 29.796 kb on + strand, within SMa0058 at 29.796 kb on + strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.949 kb on + strand, within SMa0058 at 29.986 kb on - strand, within SMa0058 at 30.015 kb on + strand, within SMa0058 at 30.016 kb on - strand, within SMa0058 at 30.120 kb on + strand, within SMa0058 at 30.120 kb on + strand, within SMa0058 at 30.213 kb on + strand, within SMa0058 at 30.213 kb on + strand, within SMa0058 at 30.342 kb on + strand, within SMa0058 at 30.390 kb on + strand, within SMa0058 at 30.393 kb on + strand, within SMa0058 at 30.394 kb on - strand, within SMa0058
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM remove 27,310 + -1.8 27,435 + SMa0050 0.63 +0.9 27,435 + SMa0050 0.63 +0.0 27,435 + SMa0050 0.63 +1.0 27,436 - SMa0050 0.64 +0.6 27,599 + SMa0052 0.44 -0.7 27,599 + SMa0052 0.44 -0.7 27,600 - SMa0052 0.45 -0.8 27,621 + SMa0052 0.55 -1.3 27,621 + SMa0052 0.55 -1.1 27,645 - SMa0052 0.67 -2.2 27,782 + +0.7 27,783 - +0.1 27,797 + +0.3 27,844 - -0.1 27,888 - -1.6 27,966 + -0.0 27,966 + +0.3 27,966 + +1.3 27,966 + +0.3 28,027 + -0.0 28,027 + +0.8 28,028 - -0.5 28,028 - -0.7 28,274 + -0.1 28,274 + -0.4 28,296 + -1.1 28,296 + +0.4 28,297 - -0.5 28,371 + -0.6 28,371 + +0.2 28,371 + -0.2 28,410 + SMa0056 0.10 -0.6 28,430 + SMa0056 0.12 +0.6 28,633 + SMa0056 0.30 +0.4 28,746 + SMa0056 0.40 -0.2 28,821 + SMa0056 0.46 -0.1 28,878 + SMa0056 0.51 -0.2 28,878 + SMa0056 0.51 +0.0 28,943 + SMa0056 0.57 -1.5 28,944 - SMa0056 0.57 -0.1 29,022 + SMa0056 0.64 +0.7 29,023 - SMa0056 0.64 +0.2 29,150 - SMa0056 0.75 +0.7 29,151 + SMa0056 0.75 -1.7 29,151 + SMa0056 0.75 +0.1 29,151 + SMa0056 0.75 -0.2 29,151 + SMa0056 0.75 -0.1 29,152 - SMa0056 0.76 +0.3 29,152 - SMa0056 0.76 -0.1 29,152 - SMa0056 0.76 -0.6 29,152 - SMa0056 0.76 +1.1 29,152 - SMa0056 0.76 -1.2 29,223 + SMa0056 0.82 +0.4 29,324 - +0.3 29,493 + +0.2 29,494 - +0.0 29,526 + -0.2 29,526 + +0.5 29,527 - +0.6 29,527 - +1.0 29,625 + SMa0058 0.11 +0.9 29,625 + SMa0058 0.11 -0.4 29,626 - SMa0058 0.11 +0.1 29,673 + SMa0058 0.15 +0.5 29,754 + SMa0058 0.22 +0.2 29,755 - SMa0058 0.22 -0.5 29,796 + SMa0058 0.25 -0.4 29,796 + SMa0058 0.25 +0.0 29,797 - SMa0058 0.25 -0.0 29,797 - SMa0058 0.25 -0.6 29,797 - SMa0058 0.25 -0.3 29,797 - SMa0058 0.25 +1.0 29,949 + SMa0058 0.38 +0.2 29,986 - SMa0058 0.41 +2.2 30,015 + SMa0058 0.44 -0.5 30,016 - SMa0058 0.44 -0.6 30,120 + SMa0058 0.52 -0.1 30,120 + SMa0058 0.52 -0.4 30,213 + SMa0058 0.60 +0.9 30,213 + SMa0058 0.60 -0.6 30,342 + SMa0058 0.71 -0.4 30,390 + SMa0058 0.75 -0.6 30,393 + SMa0058 0.75 -0.5 30,394 - SMa0058 0.75 +0.1
Or see this region's nucleotide sequence