Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21100

Experiment: 3-octanone 2.655166667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21098 and SM_b21099 are separated by 170 nucleotidesSM_b21099 and SM_b21100 are separated by 10 nucleotidesSM_b21100 and SM_b21101 are separated by 257 nucleotides SM_b21098: SM_b21098 - hypothetical protein, at 740,599 to 741,396 _b21098 SM_b21099: SM_b21099 - hypothetical protein, at 741,567 to 741,989 _b21099 SM_b21100: SM_b21100 - polysaccharide deacetylase, at 742,000 to 742,878 _b21100 SM_b21101: SM_b21101 - L-fucono-1,5-lactonase; D-arabinolactonase (from data), at 743,136 to 743,972 _b21101 Position (kb) 741 742 743Strain fitness (log2 ratio) -1 0 1at 741.038 kb on - strand, within SM_b21098at 741.364 kb on + strandat 741.365 kb on - strandat 741.417 kb on + strandat 741.417 kb on + strandat 741.417 kb on + strandat 741.418 kb on - strandat 741.642 kb on + strand, within SM_b21099at 741.643 kb on - strand, within SM_b21099at 741.643 kb on - strand, within SM_b21099at 741.643 kb on - strand, within SM_b21099at 741.706 kb on + strand, within SM_b21099at 741.714 kb on - strand, within SM_b21099at 741.714 kb on - strand, within SM_b21099at 741.714 kb on - strand, within SM_b21099at 742.006 kb on + strandat 742.006 kb on + strandat 742.007 kb on - strandat 742.007 kb on - strandat 742.178 kb on - strand, within SM_b21100at 742.291 kb on - strand, within SM_b21100at 742.478 kb on - strand, within SM_b21100at 742.478 kb on - strand, within SM_b21100at 742.887 kb on - strandat 742.915 kb on + strandat 742.945 kb on + strandat 742.946 kb on - strandat 742.976 kb on + strandat 742.976 kb on + strandat 742.976 kb on + strandat 742.977 kb on - strandat 743.061 kb on + strandat 743.061 kb on + strandat 743.061 kb on + strandat 743.134 kb on + strandat 743.134 kb on + strandat 743.135 kb on - strandat 743.327 kb on - strand, within SM_b21101at 743.327 kb on - strand, within SM_b21101at 743.366 kb on - strand, within SM_b21101at 743.423 kb on + strand, within SM_b21101at 743.424 kb on - strand, within SM_b21101at 743.457 kb on + strand, within SM_b21101at 743.457 kb on + strand, within SM_b21101at 743.458 kb on - strand, within SM_b21101at 743.458 kb on - strand, within SM_b21101at 743.522 kb on + strand, within SM_b21101at 743.522 kb on + strand, within SM_b21101at 743.693 kb on - strand, within SM_b21101at 743.826 kb on - strand, within SM_b21101at 743.869 kb on + strand, within SM_b21101at 743.878 kb on + strand, within SM_b21101

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 2.655166667 mM
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741,038 - SM_b21098 0.55 +0.9
741,364 + +0.2
741,365 - +0.3
741,417 + +0.1
741,417 + +1.0
741,417 + -0.4
741,418 - +0.2
741,642 + SM_b21099 0.18 -0.0
741,643 - SM_b21099 0.18 -0.8
741,643 - SM_b21099 0.18 +0.4
741,643 - SM_b21099 0.18 -1.4
741,706 + SM_b21099 0.33 -0.2
741,714 - SM_b21099 0.35 -0.1
741,714 - SM_b21099 0.35 +0.4
741,714 - SM_b21099 0.35 +0.3
742,006 + -0.1
742,006 + +1.0
742,007 - -0.1
742,007 - +0.3
742,178 - SM_b21100 0.20 -0.9
742,291 - SM_b21100 0.33 -1.6
742,478 - SM_b21100 0.54 +0.1
742,478 - SM_b21100 0.54 -1.3
742,887 - -0.3
742,915 + -0.5
742,945 + +0.1
742,946 - +0.6
742,976 + -0.0
742,976 + -0.3
742,976 + -0.2
742,977 - -0.0
743,061 + +0.1
743,061 + -0.0
743,061 + -0.6
743,134 + +0.6
743,134 + -0.0
743,135 - +0.2
743,327 - SM_b21101 0.23 -0.1
743,327 - SM_b21101 0.23 +0.3
743,366 - SM_b21101 0.27 +0.1
743,423 + SM_b21101 0.34 -0.6
743,424 - SM_b21101 0.34 -0.4
743,457 + SM_b21101 0.38 -1.1
743,457 + SM_b21101 0.38 -1.1
743,458 - SM_b21101 0.38 -0.4
743,458 - SM_b21101 0.38 -0.1
743,522 + SM_b21101 0.46 -0.4
743,522 + SM_b21101 0.46 -0.5
743,693 - SM_b21101 0.67 -0.1
743,826 - SM_b21101 0.82 -0.5
743,869 + SM_b21101 0.88 -0.1
743,878 + SM_b21101 0.89 +0.7

Or see this region's nucleotide sequence