Strain Fitness in Sinorhizobium meliloti 1021 around SMc04207

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04206 and SMc04207 are separated by 21 nucleotidesSMc04207 and SMc04208 overlap by 14 nucleotides SMc04206: SMc04206 - hemolysin-type calcium-binding protein, at 2,193,379 to 2,194,179 SMc04206 SMc04207: SMc04207 - toxin secretion ATP-binding ABC transporter protein, at 2,194,201 to 2,196,054 SMc04207 SMc04208: SMc04208 - toxin secretion transmembrane protein, at 2,196,041 to 2,197,351 SMc04208 Position (kb) 2194 2195 2196 2197Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2193.242 kb on - strandat 2193.257 kb on + strandat 2193.257 kb on + strandat 2193.257 kb on + strandat 2193.258 kb on - strandat 2193.415 kb on + strandat 2193.416 kb on - strandat 2193.416 kb on - strandat 2193.416 kb on - strandat 2193.420 kb on + strandat 2193.421 kb on - strandat 2193.421 kb on - strandat 2193.485 kb on - strand, within SMc04206at 2193.485 kb on - strand, within SMc04206at 2193.485 kb on - strand, within SMc04206at 2193.485 kb on - strand, within SMc04206at 2193.557 kb on - strand, within SMc04206at 2193.557 kb on - strand, within SMc04206at 2193.557 kb on - strand, within SMc04206at 2193.557 kb on - strand, within SMc04206at 2193.558 kb on + strand, within SMc04206at 2193.558 kb on + strand, within SMc04206at 2193.558 kb on + strand, within SMc04206at 2193.559 kb on - strand, within SMc04206at 2193.699 kb on + strand, within SMc04206at 2193.712 kb on + strand, within SMc04206at 2193.712 kb on + strand, within SMc04206at 2193.844 kb on - strand, within SMc04206at 2193.866 kb on - strand, within SMc04206at 2193.984 kb on + strand, within SMc04206at 2194.057 kb on + strand, within SMc04206at 2194.058 kb on - strand, within SMc04206at 2194.058 kb on - strand, within SMc04206at 2194.237 kb on - strandat 2194.283 kb on + strandat 2194.304 kb on + strandat 2194.305 kb on - strandat 2194.417 kb on + strand, within SMc04207at 2194.417 kb on + strand, within SMc04207at 2194.418 kb on - strand, within SMc04207at 2194.648 kb on + strand, within SMc04207at 2194.658 kb on + strand, within SMc04207at 2194.658 kb on + strand, within SMc04207at 2194.658 kb on + strand, within SMc04207at 2194.659 kb on - strand, within SMc04207at 2194.659 kb on - strand, within SMc04207at 2194.659 kb on - strand, within SMc04207at 2194.659 kb on - strand, within SMc04207at 2194.659 kb on - strand, within SMc04207at 2194.659 kb on - strand, within SMc04207at 2194.659 kb on - strand, within SMc04207at 2194.891 kb on + strand, within SMc04207at 2194.923 kb on - strand, within SMc04207at 2194.923 kb on - strandat 2195.155 kb on - strandat 2195.253 kb on + strand, within SMc04207at 2195.253 kb on + strand, within SMc04207at 2195.254 kb on - strand, within SMc04207at 2195.254 kb on - strand, within SMc04207at 2195.254 kb on - strand, within SMc04207at 2195.254 kb on - strand, within SMc04207at 2195.401 kb on + strand, within SMc04207at 2195.402 kb on - strand, within SMc04207at 2195.444 kb on - strand, within SMc04207at 2195.492 kb on + strand, within SMc04207at 2195.587 kb on + strand, within SMc04207at 2195.588 kb on - strand, within SMc04207at 2195.588 kb on - strand, within SMc04207at 2195.665 kb on + strand, within SMc04207at 2195.666 kb on - strand, within SMc04207at 2195.666 kb on - strand, within SMc04207at 2195.667 kb on + strand, within SMc04207at 2195.667 kb on + strand, within SMc04207at 2195.667 kb on + strand, within SMc04207at 2195.668 kb on - strand, within SMc04207at 2195.668 kb on - strand, within SMc04207at 2195.668 kb on - strand, within SMc04207at 2195.668 kb on - strand, within SMc04207at 2195.668 kb on - strand, within SMc04207at 2196.120 kb on + strandat 2196.120 kb on + strandat 2196.121 kb on - strandat 2196.123 kb on + strandat 2196.123 kb on + strandat 2196.124 kb on - strandat 2196.124 kb on - strandat 2196.124 kb on - strandat 2196.273 kb on + strand, within SMc04208at 2196.273 kb on + strand, within SMc04208at 2196.274 kb on - strand, within SMc04208at 2196.539 kb on - strand, within SMc04208at 2196.590 kb on + strand, within SMc04208at 2196.591 kb on - strand, within SMc04208at 2196.591 kb on - strand, within SMc04208at 2196.655 kb on + strand, within SMc04208at 2196.655 kb on + strand, within SMc04208at 2196.655 kb on + strand, within SMc04208at 2196.655 kb on + strand, within SMc04208at 2196.656 kb on - strand, within SMc04208at 2196.656 kb on - strand, within SMc04208at 2196.656 kb on - strand, within SMc04208at 2196.901 kb on + strand, within SMc04208at 2196.946 kb on + strand, within SMc04208at 2196.946 kb on + strand, within SMc04208at 2196.946 kb on + strand, within SMc04208at 2196.947 kb on - strand, within SMc04208at 2197.030 kb on - strand, within SMc04208

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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2,193,242 - -1.1
2,193,257 + -0.2
2,193,257 + +0.4
2,193,257 + -1.3
2,193,258 - -0.3
2,193,415 + -0.3
2,193,416 - -0.2
2,193,416 - -0.4
2,193,416 - -0.6
2,193,420 + -0.0
2,193,421 - -1.4
2,193,421 - +0.4
2,193,485 - SMc04206 0.13 -0.4
2,193,485 - SMc04206 0.13 -1.3
2,193,485 - SMc04206 0.13 +0.8
2,193,485 - SMc04206 0.13 +2.0
2,193,557 - SMc04206 0.22 +0.2
2,193,557 - SMc04206 0.22 +0.2
2,193,557 - SMc04206 0.22 -1.2
2,193,557 - SMc04206 0.22 -0.4
2,193,558 + SMc04206 0.22 -0.0
2,193,558 + SMc04206 0.22 +0.5
2,193,558 + SMc04206 0.22 -0.2
2,193,559 - SMc04206 0.22 -1.4
2,193,699 + SMc04206 0.40 -0.2
2,193,712 + SMc04206 0.42 +0.8
2,193,712 + SMc04206 0.42 +0.5
2,193,844 - SMc04206 0.58 +0.3
2,193,866 - SMc04206 0.61 -0.1
2,193,984 + SMc04206 0.76 +0.6
2,194,057 + SMc04206 0.85 +0.8
2,194,058 - SMc04206 0.85 +0.1
2,194,058 - SMc04206 0.85 +0.1
2,194,237 - +0.2
2,194,283 + -0.3
2,194,304 + -0.1
2,194,305 - -0.3
2,194,417 + SMc04207 0.12 -0.3
2,194,417 + SMc04207 0.12 +0.2
2,194,418 - SMc04207 0.12 -2.1
2,194,648 + SMc04207 0.24 -1.3
2,194,658 + SMc04207 0.25 -1.0
2,194,658 + SMc04207 0.25 -2.1
2,194,658 + SMc04207 0.25 -0.8
2,194,659 - SMc04207 0.25 +0.0
2,194,659 - SMc04207 0.25 -0.8
2,194,659 - SMc04207 0.25 +0.6
2,194,659 - SMc04207 0.25 +0.5
2,194,659 - SMc04207 0.25 -0.3
2,194,659 - SMc04207 0.25 -0.0
2,194,659 - SMc04207 0.25 -1.3
2,194,891 + SMc04207 0.37 -0.7
2,194,923 - SMc04207 0.39 +0.5
2,194,923 - +0.4
2,195,155 - +0.0
2,195,253 + SMc04207 0.57 -2.1
2,195,253 + SMc04207 0.57 -0.6
2,195,254 - SMc04207 0.57 -0.2
2,195,254 - SMc04207 0.57 -0.6
2,195,254 - SMc04207 0.57 -0.4
2,195,254 - SMc04207 0.57 -0.1
2,195,401 + SMc04207 0.65 -0.1
2,195,402 - SMc04207 0.65 -0.7
2,195,444 - SMc04207 0.67 +0.2
2,195,492 + SMc04207 0.70 -0.5
2,195,587 + SMc04207 0.75 -0.3
2,195,588 - SMc04207 0.75 +0.4
2,195,588 - SMc04207 0.75 -0.5
2,195,665 + SMc04207 0.79 +0.4
2,195,666 - SMc04207 0.79 -0.1
2,195,666 - SMc04207 0.79 +0.0
2,195,667 + SMc04207 0.79 -1.2
2,195,667 + SMc04207 0.79 +0.7
2,195,667 + SMc04207 0.79 -0.5
2,195,668 - SMc04207 0.79 -0.4
2,195,668 - SMc04207 0.79 -2.0
2,195,668 - SMc04207 0.79 +0.8
2,195,668 - SMc04207 0.79 -0.6
2,195,668 - SMc04207 0.79 -0.8
2,196,120 + -1.1
2,196,120 + +0.6
2,196,121 - +0.4
2,196,123 + +0.8
2,196,123 + +0.3
2,196,124 - -0.6
2,196,124 - +0.1
2,196,124 - -0.5
2,196,273 + SMc04208 0.18 -0.1
2,196,273 + SMc04208 0.18 -0.4
2,196,274 - SMc04208 0.18 -1.2
2,196,539 - SMc04208 0.38 +0.0
2,196,590 + SMc04208 0.42 +0.0
2,196,591 - SMc04208 0.42 -0.6
2,196,591 - SMc04208 0.42 +0.9
2,196,655 + SMc04208 0.47 +3.0
2,196,655 + SMc04208 0.47 -0.2
2,196,655 + SMc04208 0.47 -1.6
2,196,655 + SMc04208 0.47 -0.6
2,196,656 - SMc04208 0.47 -0.6
2,196,656 - SMc04208 0.47 +0.3
2,196,656 - SMc04208 0.47 -0.2
2,196,901 + SMc04208 0.66 -0.4
2,196,946 + SMc04208 0.69 +0.2
2,196,946 + SMc04208 0.69 -0.0
2,196,946 + SMc04208 0.69 -0.8
2,196,947 - SMc04208 0.69 -0.5
2,197,030 - SMc04208 0.75 -0.0

Or see this region's nucleotide sequence