Experiment: 3-octanone 5.310333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04206 and SMc04207 are separated by 21 nucleotides SMc04207 and SMc04208 overlap by 14 nucleotides
SMc04206: SMc04206 - hemolysin-type calcium-binding protein, at 2,193,379 to 2,194,179
SMc04206
SMc04207: SMc04207 - toxin secretion ATP-binding ABC transporter protein, at 2,194,201 to 2,196,054
SMc04207
SMc04208: SMc04208 - toxin secretion transmembrane protein, at 2,196,041 to 2,197,351
SMc04208
Position (kb)
2194
2195
2196
2197 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2193.242 kb on - strand at 2193.257 kb on + strand at 2193.257 kb on + strand at 2193.257 kb on + strand at 2193.258 kb on - strand at 2193.415 kb on + strand at 2193.416 kb on - strand at 2193.416 kb on - strand at 2193.416 kb on - strand at 2193.420 kb on + strand at 2193.421 kb on - strand at 2193.421 kb on - strand at 2193.485 kb on - strand, within SMc04206 at 2193.485 kb on - strand, within SMc04206 at 2193.485 kb on - strand, within SMc04206 at 2193.485 kb on - strand, within SMc04206 at 2193.557 kb on - strand, within SMc04206 at 2193.557 kb on - strand, within SMc04206 at 2193.557 kb on - strand, within SMc04206 at 2193.557 kb on - strand, within SMc04206 at 2193.558 kb on + strand, within SMc04206 at 2193.558 kb on + strand, within SMc04206 at 2193.558 kb on + strand, within SMc04206 at 2193.559 kb on - strand, within SMc04206 at 2193.699 kb on + strand, within SMc04206 at 2193.712 kb on + strand, within SMc04206 at 2193.712 kb on + strand, within SMc04206 at 2193.844 kb on - strand, within SMc04206 at 2193.866 kb on - strand, within SMc04206 at 2193.984 kb on + strand, within SMc04206 at 2194.057 kb on + strand, within SMc04206 at 2194.058 kb on - strand, within SMc04206 at 2194.058 kb on - strand, within SMc04206 at 2194.237 kb on - strand at 2194.283 kb on + strand at 2194.304 kb on + strand at 2194.305 kb on - strand at 2194.417 kb on + strand, within SMc04207 at 2194.417 kb on + strand, within SMc04207 at 2194.418 kb on - strand, within SMc04207 at 2194.648 kb on + strand, within SMc04207 at 2194.658 kb on + strand, within SMc04207 at 2194.658 kb on + strand, within SMc04207 at 2194.658 kb on + strand, within SMc04207 at 2194.659 kb on - strand, within SMc04207 at 2194.659 kb on - strand, within SMc04207 at 2194.659 kb on - strand, within SMc04207 at 2194.659 kb on - strand, within SMc04207 at 2194.659 kb on - strand, within SMc04207 at 2194.659 kb on - strand, within SMc04207 at 2194.659 kb on - strand, within SMc04207 at 2194.891 kb on + strand, within SMc04207 at 2194.923 kb on - strand, within SMc04207 at 2194.923 kb on - strand at 2195.155 kb on - strand at 2195.253 kb on + strand, within SMc04207 at 2195.253 kb on + strand, within SMc04207 at 2195.254 kb on - strand, within SMc04207 at 2195.254 kb on - strand, within SMc04207 at 2195.254 kb on - strand, within SMc04207 at 2195.254 kb on - strand, within SMc04207 at 2195.401 kb on + strand, within SMc04207 at 2195.402 kb on - strand, within SMc04207 at 2195.444 kb on - strand, within SMc04207 at 2195.492 kb on + strand, within SMc04207 at 2195.587 kb on + strand, within SMc04207 at 2195.588 kb on - strand, within SMc04207 at 2195.588 kb on - strand, within SMc04207 at 2195.665 kb on + strand, within SMc04207 at 2195.666 kb on - strand, within SMc04207 at 2195.666 kb on - strand, within SMc04207 at 2195.667 kb on + strand, within SMc04207 at 2195.667 kb on + strand, within SMc04207 at 2195.667 kb on + strand, within SMc04207 at 2195.668 kb on - strand, within SMc04207 at 2195.668 kb on - strand, within SMc04207 at 2195.668 kb on - strand, within SMc04207 at 2195.668 kb on - strand, within SMc04207 at 2195.668 kb on - strand, within SMc04207 at 2196.120 kb on + strand at 2196.120 kb on + strand at 2196.121 kb on - strand at 2196.123 kb on + strand at 2196.123 kb on + strand at 2196.124 kb on - strand at 2196.124 kb on - strand at 2196.124 kb on - strand at 2196.273 kb on + strand, within SMc04208 at 2196.273 kb on + strand, within SMc04208 at 2196.274 kb on - strand, within SMc04208 at 2196.539 kb on - strand, within SMc04208 at 2196.590 kb on + strand, within SMc04208 at 2196.591 kb on - strand, within SMc04208 at 2196.591 kb on - strand, within SMc04208 at 2196.655 kb on + strand, within SMc04208 at 2196.655 kb on + strand, within SMc04208 at 2196.655 kb on + strand, within SMc04208 at 2196.655 kb on + strand, within SMc04208 at 2196.656 kb on - strand, within SMc04208 at 2196.656 kb on - strand, within SMc04208 at 2196.656 kb on - strand, within SMc04208 at 2196.901 kb on + strand, within SMc04208 at 2196.946 kb on + strand, within SMc04208 at 2196.946 kb on + strand, within SMc04208 at 2196.946 kb on + strand, within SMc04208 at 2196.947 kb on - strand, within SMc04208 at 2197.030 kb on - strand, within SMc04208
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM remove 2,193,242 - -1.1 2,193,257 + -0.2 2,193,257 + +0.4 2,193,257 + -1.3 2,193,258 - -0.3 2,193,415 + -0.3 2,193,416 - -0.2 2,193,416 - -0.4 2,193,416 - -0.6 2,193,420 + -0.0 2,193,421 - -1.4 2,193,421 - +0.4 2,193,485 - SMc04206 0.13 -0.4 2,193,485 - SMc04206 0.13 -1.3 2,193,485 - SMc04206 0.13 +0.8 2,193,485 - SMc04206 0.13 +2.0 2,193,557 - SMc04206 0.22 +0.2 2,193,557 - SMc04206 0.22 +0.2 2,193,557 - SMc04206 0.22 -1.2 2,193,557 - SMc04206 0.22 -0.4 2,193,558 + SMc04206 0.22 -0.0 2,193,558 + SMc04206 0.22 +0.5 2,193,558 + SMc04206 0.22 -0.2 2,193,559 - SMc04206 0.22 -1.4 2,193,699 + SMc04206 0.40 -0.2 2,193,712 + SMc04206 0.42 +0.8 2,193,712 + SMc04206 0.42 +0.5 2,193,844 - SMc04206 0.58 +0.3 2,193,866 - SMc04206 0.61 -0.1 2,193,984 + SMc04206 0.76 +0.6 2,194,057 + SMc04206 0.85 +0.8 2,194,058 - SMc04206 0.85 +0.1 2,194,058 - SMc04206 0.85 +0.1 2,194,237 - +0.2 2,194,283 + -0.3 2,194,304 + -0.1 2,194,305 - -0.3 2,194,417 + SMc04207 0.12 -0.3 2,194,417 + SMc04207 0.12 +0.2 2,194,418 - SMc04207 0.12 -2.1 2,194,648 + SMc04207 0.24 -1.3 2,194,658 + SMc04207 0.25 -1.0 2,194,658 + SMc04207 0.25 -2.1 2,194,658 + SMc04207 0.25 -0.8 2,194,659 - SMc04207 0.25 +0.0 2,194,659 - SMc04207 0.25 -0.8 2,194,659 - SMc04207 0.25 +0.6 2,194,659 - SMc04207 0.25 +0.5 2,194,659 - SMc04207 0.25 -0.3 2,194,659 - SMc04207 0.25 -0.0 2,194,659 - SMc04207 0.25 -1.3 2,194,891 + SMc04207 0.37 -0.7 2,194,923 - SMc04207 0.39 +0.5 2,194,923 - +0.4 2,195,155 - +0.0 2,195,253 + SMc04207 0.57 -2.1 2,195,253 + SMc04207 0.57 -0.6 2,195,254 - SMc04207 0.57 -0.2 2,195,254 - SMc04207 0.57 -0.6 2,195,254 - SMc04207 0.57 -0.4 2,195,254 - SMc04207 0.57 -0.1 2,195,401 + SMc04207 0.65 -0.1 2,195,402 - SMc04207 0.65 -0.7 2,195,444 - SMc04207 0.67 +0.2 2,195,492 + SMc04207 0.70 -0.5 2,195,587 + SMc04207 0.75 -0.3 2,195,588 - SMc04207 0.75 +0.4 2,195,588 - SMc04207 0.75 -0.5 2,195,665 + SMc04207 0.79 +0.4 2,195,666 - SMc04207 0.79 -0.1 2,195,666 - SMc04207 0.79 +0.0 2,195,667 + SMc04207 0.79 -1.2 2,195,667 + SMc04207 0.79 +0.7 2,195,667 + SMc04207 0.79 -0.5 2,195,668 - SMc04207 0.79 -0.4 2,195,668 - SMc04207 0.79 -2.0 2,195,668 - SMc04207 0.79 +0.8 2,195,668 - SMc04207 0.79 -0.6 2,195,668 - SMc04207 0.79 -0.8 2,196,120 + -1.1 2,196,120 + +0.6 2,196,121 - +0.4 2,196,123 + +0.8 2,196,123 + +0.3 2,196,124 - -0.6 2,196,124 - +0.1 2,196,124 - -0.5 2,196,273 + SMc04208 0.18 -0.1 2,196,273 + SMc04208 0.18 -0.4 2,196,274 - SMc04208 0.18 -1.2 2,196,539 - SMc04208 0.38 +0.0 2,196,590 + SMc04208 0.42 +0.0 2,196,591 - SMc04208 0.42 -0.6 2,196,591 - SMc04208 0.42 +0.9 2,196,655 + SMc04208 0.47 +3.0 2,196,655 + SMc04208 0.47 -0.2 2,196,655 + SMc04208 0.47 -1.6 2,196,655 + SMc04208 0.47 -0.6 2,196,656 - SMc04208 0.47 -0.6 2,196,656 - SMc04208 0.47 +0.3 2,196,656 - SMc04208 0.47 -0.2 2,196,901 + SMc04208 0.66 -0.4 2,196,946 + SMc04208 0.69 +0.2 2,196,946 + SMc04208 0.69 -0.0 2,196,946 + SMc04208 0.69 -0.8 2,196,947 - SMc04208 0.69 -0.5 2,197,030 - SMc04208 0.75 -0.0
Or see this region's nucleotide sequence