Strain Fitness in Sinorhizobium meliloti 1021 around SMa2335

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2333 and SMa2335 are separated by 225 nucleotidesSMa2335 and SMa2337 are separated by 271 nucleotides SMa2333: SMa2333 - potassium-transporting ATPase subunit A, at 1,302,414 to 1,304,123 SMa2333 SMa2335: SMa2335 - hypothetical protein, at 1,304,349 to 1,304,552 SMa2335 SMa2337: SMa2337 - RhtX rhizobactin transporter, at 1,304,824 to 1,306,119 SMa2337 Position (kb) 1304 1305Strain fitness (log2 ratio) -1 0 1 2at 1303.355 kb on - strand, within SMa2333at 1303.585 kb on + strand, within SMa2333at 1303.585 kb on + strand, within SMa2333at 1303.585 kb on + strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.586 kb on - strand, within SMa2333at 1303.759 kb on + strand, within SMa2333at 1303.760 kb on - strand, within SMa2333at 1303.869 kb on - strand, within SMa2333at 1304.047 kb on + strandat 1304.048 kb on - strandat 1304.255 kb on - strandat 1304.290 kb on + strandat 1304.515 kb on + strand, within SMa2335at 1304.515 kb on + strand, within SMa2335at 1304.515 kb on + strand, within SMa2335at 1304.516 kb on - strand, within SMa2335at 1304.516 kb on - strand, within SMa2335at 1304.526 kb on + strand, within SMa2335at 1304.526 kb on + strand, within SMa2335at 1304.527 kb on - strand, within SMa2335at 1304.527 kb on - strand, within SMa2335at 1304.642 kb on + strandat 1304.642 kb on + strandat 1304.682 kb on + strandat 1304.710 kb on - strandat 1304.717 kb on + strandat 1304.717 kb on + strandat 1304.718 kb on - strandat 1304.948 kb on - strandat 1305.062 kb on + strand, within SMa2337at 1305.171 kb on + strand, within SMa2337at 1305.171 kb on + strand, within SMa2337at 1305.172 kb on - strand, within SMa2337at 1305.172 kb on - strand, within SMa2337at 1305.173 kb on + strand, within SMa2337at 1305.173 kb on + strand, within SMa2337at 1305.173 kb on + strand, within SMa2337at 1305.174 kb on - strand, within SMa2337at 1305.277 kb on + strand, within SMa2337at 1305.277 kb on + strand, within SMa2337at 1305.479 kb on + strand, within SMa2337at 1305.480 kb on - strand, within SMa2337at 1305.483 kb on + strand, within SMa2337at 1305.483 kb on + strand, within SMa2337at 1305.483 kb on + strand, within SMa2337at 1305.484 kb on - strand, within SMa2337

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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1,303,355 - SMa2333 0.55 -0.1
1,303,585 + SMa2333 0.68 -0.1
1,303,585 + SMa2333 0.68 -1.1
1,303,585 + SMa2333 0.68 +1.0
1,303,586 - SMa2333 0.69 -1.3
1,303,586 - SMa2333 0.69 +0.4
1,303,586 - SMa2333 0.69 -0.4
1,303,586 - SMa2333 0.69 -0.3
1,303,759 + SMa2333 0.79 -0.2
1,303,760 - SMa2333 0.79 -1.6
1,303,869 - SMa2333 0.85 -0.2
1,304,047 + -0.8
1,304,048 - +0.3
1,304,255 - -0.0
1,304,290 + +0.1
1,304,515 + SMa2335 0.81 -0.2
1,304,515 + SMa2335 0.81 -0.6
1,304,515 + SMa2335 0.81 -1.1
1,304,516 - SMa2335 0.82 -1.0
1,304,516 - SMa2335 0.82 +1.6
1,304,526 + SMa2335 0.87 -0.8
1,304,526 + SMa2335 0.87 +0.4
1,304,527 - SMa2335 0.87 -1.0
1,304,527 - SMa2335 0.87 -0.3
1,304,642 + -0.0
1,304,642 + +1.4
1,304,682 + -0.9
1,304,710 - -0.3
1,304,717 + -0.2
1,304,717 + -0.6
1,304,718 - +0.8
1,304,948 - -0.5
1,305,062 + SMa2337 0.18 -0.2
1,305,171 + SMa2337 0.27 -0.1
1,305,171 + SMa2337 0.27 +0.0
1,305,172 - SMa2337 0.27 -0.6
1,305,172 - SMa2337 0.27 +0.3
1,305,173 + SMa2337 0.27 +0.0
1,305,173 + SMa2337 0.27 -0.7
1,305,173 + SMa2337 0.27 +0.6
1,305,174 - SMa2337 0.27 +1.0
1,305,277 + SMa2337 0.35 -0.5
1,305,277 + SMa2337 0.35 -0.5
1,305,479 + SMa2337 0.51 -0.6
1,305,480 - SMa2337 0.51 -0.2
1,305,483 + SMa2337 0.51 -0.3
1,305,483 + SMa2337 0.51 +0.6
1,305,483 + SMa2337 0.51 +2.4
1,305,484 - SMa2337 0.51 +0.2

Or see this region's nucleotide sequence