Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21592

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21590 and SM_b21591 are separated by 17 nucleotidesSM_b21591 and SM_b21592 are separated by 145 nucleotidesSM_b21592 and SM_b21593 overlap by 4 nucleotidesSM_b21593 and SM_b21594 overlap by 4 nucleotides SM_b21590: SM_b21590 - inner membrane ABC transporter permease YjfF, at 1,130,536 to 1,131,504 _b21590 SM_b21591: SM_b21591 - GntR family transcriptional regulator, at 1,131,522 to 1,132,256 _b21591 SM_b21592: SM_b21592 - sugar uptake ABC transporter ATP-binding protein, at 1,132,402 to 1,133,553 _b21592 SM_b21593: SM_b21593 - sugar uptake ABC transporter permease, at 1,133,550 to 1,134,377 _b21593 SM_b21594: SM_b21594 - sugar uptake ABC transporter permease, at 1,134,374 to 1,135,276 _b21594 Position (kb) 1132 1133 1134Strain fitness (log2 ratio) -2 -1 0 1 2at 1131.668 kb on - strand, within SM_b21591at 1131.870 kb on + strand, within SM_b21591at 1132.137 kb on - strand, within SM_b21591at 1132.343 kb on + strandat 1132.343 kb on + strandat 1132.549 kb on - strand, within SM_b21592at 1132.619 kb on - strand, within SM_b21592at 1132.622 kb on + strand, within SM_b21592at 1132.622 kb on + strand, within SM_b21592at 1132.622 kb on + strand, within SM_b21592at 1132.623 kb on - strand, within SM_b21592at 1132.623 kb on - strand, within SM_b21592at 1132.623 kb on - strand, within SM_b21592at 1132.662 kb on + strand, within SM_b21592at 1132.886 kb on + strand, within SM_b21592at 1132.887 kb on - strand, within SM_b21592at 1132.985 kb on + strand, within SM_b21592at 1132.986 kb on - strand, within SM_b21592at 1132.986 kb on - strand, within SM_b21592at 1133.037 kb on + strand, within SM_b21592at 1133.037 kb on + strand, within SM_b21592at 1133.037 kb on + strand, within SM_b21592at 1133.038 kb on - strand, within SM_b21592at 1133.246 kb on - strand, within SM_b21592at 1133.258 kb on + strand, within SM_b21592at 1133.259 kb on - strand, within SM_b21592at 1133.283 kb on + strand, within SM_b21592at 1133.284 kb on - strand, within SM_b21592at 1133.292 kb on - strand, within SM_b21592at 1133.300 kb on + strand, within SM_b21592at 1133.300 kb on + strand, within SM_b21592at 1133.301 kb on - strand, within SM_b21592at 1133.301 kb on - strand, within SM_b21592at 1133.473 kb on + strandat 1133.504 kb on + strandat 1133.514 kb on - strandat 1133.629 kb on + strandat 1133.629 kb on + strandat 1133.629 kb on + strandat 1133.630 kb on - strandat 1133.630 kb on - strandat 1133.642 kb on - strand, within SM_b21593at 1133.651 kb on + strand, within SM_b21593at 1133.652 kb on - strand, within SM_b21593at 1133.670 kb on - strand, within SM_b21593at 1134.103 kb on + strand, within SM_b21593at 1134.103 kb on + strand, within SM_b21593at 1134.104 kb on - strand, within SM_b21593at 1134.175 kb on + strand, within SM_b21593at 1134.211 kb on + strand, within SM_b21593at 1134.212 kb on - strand, within SM_b21593at 1134.287 kb on + strand, within SM_b21593at 1134.292 kb on + strand, within SM_b21593at 1134.292 kb on + strand, within SM_b21593at 1134.301 kb on + strandat 1134.302 kb on - strandat 1134.316 kb on + strandat 1134.316 kb on + strandat 1134.316 kb on + strandat 1134.316 kb on + strandat 1134.317 kb on - strandat 1134.317 kb on - strandat 1134.317 kb on - strandat 1134.408 kb on + strandat 1134.408 kb on + strandat 1134.409 kb on - strandat 1134.477 kb on + strand, within SM_b21594at 1134.478 kb on - strand, within SM_b21594at 1134.478 kb on - strand, within SM_b21594at 1134.508 kb on - strand, within SM_b21594at 1134.526 kb on + strand, within SM_b21594at 1134.526 kb on + strand, within SM_b21594at 1134.527 kb on - strand, within SM_b21594at 1134.527 kb on - strand, within SM_b21594at 1134.527 kb on - strand, within SM_b21594

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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1,131,668 - SM_b21591 0.20 +1.0
1,131,870 + SM_b21591 0.47 -0.3
1,132,137 - SM_b21591 0.84 -0.8
1,132,343 + -1.0
1,132,343 + +0.7
1,132,549 - SM_b21592 0.13 -0.3
1,132,619 - SM_b21592 0.19 +0.1
1,132,622 + SM_b21592 0.19 +0.8
1,132,622 + SM_b21592 0.19 +0.5
1,132,622 + SM_b21592 0.19 -0.8
1,132,623 - SM_b21592 0.19 +0.1
1,132,623 - SM_b21592 0.19 +0.4
1,132,623 - SM_b21592 0.19 +0.2
1,132,662 + SM_b21592 0.23 -0.7
1,132,886 + SM_b21592 0.42 +0.3
1,132,887 - SM_b21592 0.42 -0.1
1,132,985 + SM_b21592 0.51 +0.2
1,132,986 - SM_b21592 0.51 -0.1
1,132,986 - SM_b21592 0.51 -0.5
1,133,037 + SM_b21592 0.55 +0.0
1,133,037 + SM_b21592 0.55 +0.6
1,133,037 + SM_b21592 0.55 +0.5
1,133,038 - SM_b21592 0.55 -0.3
1,133,246 - SM_b21592 0.73 -0.0
1,133,258 + SM_b21592 0.74 -0.2
1,133,259 - SM_b21592 0.74 -0.5
1,133,283 + SM_b21592 0.76 +0.5
1,133,284 - SM_b21592 0.77 -0.3
1,133,292 - SM_b21592 0.77 +0.7
1,133,300 + SM_b21592 0.78 -0.2
1,133,300 + SM_b21592 0.78 +0.7
1,133,301 - SM_b21592 0.78 +0.3
1,133,301 - SM_b21592 0.78 +1.4
1,133,473 + +0.5
1,133,504 + +0.2
1,133,514 - +0.8
1,133,629 + -0.7
1,133,629 + +2.0
1,133,629 + -0.0
1,133,630 - -1.1
1,133,630 - +0.5
1,133,642 - SM_b21593 0.11 -0.4
1,133,651 + SM_b21593 0.12 -0.1
1,133,652 - SM_b21593 0.12 -2.0
1,133,670 - SM_b21593 0.14 -0.4
1,134,103 + SM_b21593 0.67 -0.2
1,134,103 + SM_b21593 0.67 -0.7
1,134,104 - SM_b21593 0.67 -0.5
1,134,175 + SM_b21593 0.75 -0.1
1,134,211 + SM_b21593 0.80 +0.4
1,134,212 - SM_b21593 0.80 -0.5
1,134,287 + SM_b21593 0.89 -1.0
1,134,292 + SM_b21593 0.90 +0.3
1,134,292 + SM_b21593 0.90 +0.0
1,134,301 + +0.2
1,134,302 - -0.9
1,134,316 + +1.0
1,134,316 + -0.5
1,134,316 + -0.3
1,134,316 + +0.1
1,134,317 - +0.1
1,134,317 - -0.2
1,134,317 - +1.3
1,134,408 + +0.3
1,134,408 + +0.1
1,134,409 - +0.9
1,134,477 + SM_b21594 0.11 -0.7
1,134,478 - SM_b21594 0.12 -0.4
1,134,478 - SM_b21594 0.12 -0.2
1,134,508 - SM_b21594 0.15 -0.9
1,134,526 + SM_b21594 0.17 -0.3
1,134,526 + SM_b21594 0.17 +0.4
1,134,527 - SM_b21594 0.17 -0.6
1,134,527 - SM_b21594 0.17 +0.4
1,134,527 - SM_b21594 0.17 +1.3

Or see this region's nucleotide sequence