Experiment: 3-octanone 5.310333333 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01792 and SMc01793 are separated by 58 nucleotides SMc01793 and SMc01794 are separated by 5 nucleotides SMc01794 and SMc01795 are separated by 209 nucleotides
SMc01792: SMc01792 - sugar transferase, at 1,337,917 to 1,339,479
SMc01792
SMc01793: SMc01793 - glycosyltransferase, at 1,339,538 to 1,340,707
SMc01793
SMc01794: SMc01794 - polysaccharide export system periplasmic transmembrane protein, at 1,340,713 to 1,341,288
SMc01794
SMc01795: SMc01795 - polysaccharide transporter, at 1,341,498 to 1,343,636
SMc01795
Position (kb)
1339
1340
1341 Strain fitness (log2 ratio)
-1
0
1
2 at 1338.575 kb on + strand, within SMc01792 at 1338.576 kb on - strand, within SMc01792 at 1338.944 kb on + strand, within SMc01792 at 1338.945 kb on - strand, within SMc01792 at 1339.019 kb on + strand, within SMc01792 at 1339.020 kb on - strand, within SMc01792 at 1339.137 kb on - strand, within SMc01792 at 1339.137 kb on - strand, within SMc01792 at 1339.137 kb on - strand, within SMc01792 at 1339.199 kb on + strand, within SMc01792 at 1339.199 kb on + strand, within SMc01792 at 1339.199 kb on + strand, within SMc01792 at 1339.200 kb on - strand, within SMc01792 at 1339.232 kb on + strand, within SMc01792 at 1339.232 kb on + strand, within SMc01792 at 1339.233 kb on - strand, within SMc01792 at 1339.314 kb on + strand, within SMc01792 at 1339.314 kb on + strand, within SMc01792 at 1339.314 kb on + strand, within SMc01792 at 1339.316 kb on + strand, within SMc01792 at 1339.316 kb on + strand, within SMc01792 at 1339.316 kb on + strand, within SMc01792 at 1339.317 kb on - strand, within SMc01792 at 1339.317 kb on - strand, within SMc01792 at 1339.317 kb on - strand, within SMc01792 at 1339.317 kb on - strand at 1339.539 kb on + strand at 1339.539 kb on + strand at 1339.547 kb on - strand at 1339.799 kb on + strand, within SMc01793 at 1339.800 kb on - strand, within SMc01793 at 1339.834 kb on + strand, within SMc01793 at 1339.834 kb on + strand, within SMc01793 at 1339.835 kb on - strand, within SMc01793 at 1339.836 kb on + strand, within SMc01793 at 1339.836 kb on + strand, within SMc01793 at 1339.836 kb on + strand, within SMc01793 at 1339.837 kb on - strand, within SMc01793 at 1339.837 kb on - strand, within SMc01793 at 1339.963 kb on - strand, within SMc01793 at 1340.089 kb on - strand, within SMc01793 at 1340.152 kb on + strand, within SMc01793 at 1340.154 kb on + strand, within SMc01793 at 1340.154 kb on + strand, within SMc01793 at 1340.154 kb on + strand, within SMc01793 at 1340.155 kb on - strand, within SMc01793 at 1340.200 kb on - strand, within SMc01793 at 1340.200 kb on - strand, within SMc01793 at 1340.215 kb on - strand, within SMc01793 at 1340.331 kb on + strand, within SMc01793 at 1340.420 kb on + strand, within SMc01793 at 1340.420 kb on + strand, within SMc01793 at 1340.421 kb on - strand, within SMc01793 at 1340.421 kb on - strand, within SMc01793 at 1340.651 kb on + strand at 1340.732 kb on - strand at 1340.733 kb on + strand at 1340.733 kb on + strand at 1340.733 kb on + strand at 1340.734 kb on - strand at 1340.734 kb on - strand at 1340.734 kb on - strand at 1340.736 kb on - strand at 1340.736 kb on - strand at 1340.736 kb on - strand at 1340.736 kb on - strand at 1340.736 kb on - strand at 1340.875 kb on + strand, within SMc01794 at 1340.875 kb on + strand, within SMc01794 at 1340.875 kb on + strand, within SMc01794 at 1340.894 kb on + strand, within SMc01794 at 1340.894 kb on + strand, within SMc01794 at 1340.895 kb on - strand, within SMc01794 at 1340.895 kb on - strand, within SMc01794 at 1340.895 kb on - strand, within SMc01794 at 1340.895 kb on - strand, within SMc01794 at 1340.900 kb on + strand, within SMc01794 at 1341.033 kb on + strand, within SMc01794 at 1341.034 kb on - strand, within SMc01794 at 1341.034 kb on - strand, within SMc01794 at 1341.077 kb on + strand, within SMc01794 at 1341.077 kb on + strand, within SMc01794 at 1341.098 kb on + strand, within SMc01794 at 1341.098 kb on + strand, within SMc01794 at 1341.098 kb on + strand, within SMc01794 at 1341.099 kb on - strand, within SMc01794 at 1341.099 kb on - strand, within SMc01794 at 1341.209 kb on + strand, within SMc01794 at 1341.341 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM remove 1,338,575 + SMc01792 0.42 +1.0 1,338,576 - SMc01792 0.42 -0.4 1,338,944 + SMc01792 0.66 +0.1 1,338,945 - SMc01792 0.66 +0.2 1,339,019 + SMc01792 0.71 +0.1 1,339,020 - SMc01792 0.71 +0.5 1,339,137 - SMc01792 0.78 -0.5 1,339,137 - SMc01792 0.78 -0.1 1,339,137 - SMc01792 0.78 +0.3 1,339,199 + SMc01792 0.82 +0.0 1,339,199 + SMc01792 0.82 -0.1 1,339,199 + SMc01792 0.82 +0.7 1,339,200 - SMc01792 0.82 -0.4 1,339,232 + SMc01792 0.84 +0.5 1,339,232 + SMc01792 0.84 -0.5 1,339,233 - SMc01792 0.84 -0.3 1,339,314 + SMc01792 0.89 -0.9 1,339,314 + SMc01792 0.89 -0.2 1,339,314 + SMc01792 0.89 +0.7 1,339,316 + SMc01792 0.90 -0.1 1,339,316 + SMc01792 0.90 -0.2 1,339,316 + SMc01792 0.90 +0.0 1,339,317 - SMc01792 0.90 +0.0 1,339,317 - SMc01792 0.90 +0.2 1,339,317 - SMc01792 0.90 +0.6 1,339,317 - +1.4 1,339,539 + -0.2 1,339,539 + +0.3 1,339,547 - +0.2 1,339,799 + SMc01793 0.22 -0.5 1,339,800 - SMc01793 0.22 +0.5 1,339,834 + SMc01793 0.25 -0.2 1,339,834 + SMc01793 0.25 +1.0 1,339,835 - SMc01793 0.25 +1.5 1,339,836 + SMc01793 0.25 +0.0 1,339,836 + SMc01793 0.25 +1.5 1,339,836 + SMc01793 0.25 +0.1 1,339,837 - SMc01793 0.26 +0.1 1,339,837 - SMc01793 0.26 +0.1 1,339,963 - SMc01793 0.36 +0.6 1,340,089 - SMc01793 0.47 +0.5 1,340,152 + SMc01793 0.52 +0.2 1,340,154 + SMc01793 0.53 +2.0 1,340,154 + SMc01793 0.53 +0.6 1,340,154 + SMc01793 0.53 -0.0 1,340,155 - SMc01793 0.53 -0.6 1,340,200 - SMc01793 0.57 -0.0 1,340,200 - SMc01793 0.57 -0.5 1,340,215 - SMc01793 0.58 +0.1 1,340,331 + SMc01793 0.68 -0.5 1,340,420 + SMc01793 0.75 -0.7 1,340,420 + SMc01793 0.75 +0.3 1,340,421 - SMc01793 0.75 -0.9 1,340,421 - SMc01793 0.75 +0.5 1,340,651 + -0.5 1,340,732 - -0.6 1,340,733 + -0.1 1,340,733 + +0.6 1,340,733 + +0.3 1,340,734 - -0.3 1,340,734 - +0.3 1,340,734 - -0.0 1,340,736 - +0.5 1,340,736 - -1.1 1,340,736 - +2.0 1,340,736 - +2.0 1,340,736 - -0.5 1,340,875 + SMc01794 0.28 -1.7 1,340,875 + SMc01794 0.28 -0.9 1,340,875 + SMc01794 0.28 +1.1 1,340,894 + SMc01794 0.31 -0.0 1,340,894 + SMc01794 0.31 -0.1 1,340,895 - SMc01794 0.32 +0.1 1,340,895 - SMc01794 0.32 -0.7 1,340,895 - SMc01794 0.32 -0.2 1,340,895 - SMc01794 0.32 +0.7 1,340,900 + SMc01794 0.32 +0.2 1,341,033 + SMc01794 0.56 -1.1 1,341,034 - SMc01794 0.56 -0.5 1,341,034 - SMc01794 0.56 +0.6 1,341,077 + SMc01794 0.63 -0.1 1,341,077 + SMc01794 0.63 +0.1 1,341,098 + SMc01794 0.67 +0.4 1,341,098 + SMc01794 0.67 -0.9 1,341,098 + SMc01794 0.67 -0.6 1,341,099 - SMc01794 0.67 -0.3 1,341,099 - SMc01794 0.67 +1.5 1,341,209 + SMc01794 0.86 -0.6 1,341,341 - -0.0
Or see this region's nucleotide sequence