Strain Fitness in Sinorhizobium meliloti 1021 around SMc01793

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01792 and SMc01793 are separated by 58 nucleotidesSMc01793 and SMc01794 are separated by 5 nucleotidesSMc01794 and SMc01795 are separated by 209 nucleotides SMc01792: SMc01792 - sugar transferase, at 1,337,917 to 1,339,479 SMc01792 SMc01793: SMc01793 - glycosyltransferase, at 1,339,538 to 1,340,707 SMc01793 SMc01794: SMc01794 - polysaccharide export system periplasmic transmembrane protein, at 1,340,713 to 1,341,288 SMc01794 SMc01795: SMc01795 - polysaccharide transporter, at 1,341,498 to 1,343,636 SMc01795 Position (kb) 1339 1340 1341Strain fitness (log2 ratio) -1 0 1 2at 1338.575 kb on + strand, within SMc01792at 1338.576 kb on - strand, within SMc01792at 1338.944 kb on + strand, within SMc01792at 1338.945 kb on - strand, within SMc01792at 1339.019 kb on + strand, within SMc01792at 1339.020 kb on - strand, within SMc01792at 1339.137 kb on - strand, within SMc01792at 1339.137 kb on - strand, within SMc01792at 1339.137 kb on - strand, within SMc01792at 1339.199 kb on + strand, within SMc01792at 1339.199 kb on + strand, within SMc01792at 1339.199 kb on + strand, within SMc01792at 1339.200 kb on - strand, within SMc01792at 1339.232 kb on + strand, within SMc01792at 1339.232 kb on + strand, within SMc01792at 1339.233 kb on - strand, within SMc01792at 1339.314 kb on + strand, within SMc01792at 1339.314 kb on + strand, within SMc01792at 1339.314 kb on + strand, within SMc01792at 1339.316 kb on + strand, within SMc01792at 1339.316 kb on + strand, within SMc01792at 1339.316 kb on + strand, within SMc01792at 1339.317 kb on - strand, within SMc01792at 1339.317 kb on - strand, within SMc01792at 1339.317 kb on - strand, within SMc01792at 1339.317 kb on - strandat 1339.539 kb on + strandat 1339.539 kb on + strandat 1339.547 kb on - strandat 1339.799 kb on + strand, within SMc01793at 1339.800 kb on - strand, within SMc01793at 1339.834 kb on + strand, within SMc01793at 1339.834 kb on + strand, within SMc01793at 1339.835 kb on - strand, within SMc01793at 1339.836 kb on + strand, within SMc01793at 1339.836 kb on + strand, within SMc01793at 1339.836 kb on + strand, within SMc01793at 1339.837 kb on - strand, within SMc01793at 1339.837 kb on - strand, within SMc01793at 1339.963 kb on - strand, within SMc01793at 1340.089 kb on - strand, within SMc01793at 1340.152 kb on + strand, within SMc01793at 1340.154 kb on + strand, within SMc01793at 1340.154 kb on + strand, within SMc01793at 1340.154 kb on + strand, within SMc01793at 1340.155 kb on - strand, within SMc01793at 1340.200 kb on - strand, within SMc01793at 1340.200 kb on - strand, within SMc01793at 1340.215 kb on - strand, within SMc01793at 1340.331 kb on + strand, within SMc01793at 1340.420 kb on + strand, within SMc01793at 1340.420 kb on + strand, within SMc01793at 1340.421 kb on - strand, within SMc01793at 1340.421 kb on - strand, within SMc01793at 1340.651 kb on + strandat 1340.732 kb on - strandat 1340.733 kb on + strandat 1340.733 kb on + strandat 1340.733 kb on + strandat 1340.734 kb on - strandat 1340.734 kb on - strandat 1340.734 kb on - strandat 1340.736 kb on - strandat 1340.736 kb on - strandat 1340.736 kb on - strandat 1340.736 kb on - strandat 1340.736 kb on - strandat 1340.875 kb on + strand, within SMc01794at 1340.875 kb on + strand, within SMc01794at 1340.875 kb on + strand, within SMc01794at 1340.894 kb on + strand, within SMc01794at 1340.894 kb on + strand, within SMc01794at 1340.895 kb on - strand, within SMc01794at 1340.895 kb on - strand, within SMc01794at 1340.895 kb on - strand, within SMc01794at 1340.895 kb on - strand, within SMc01794at 1340.900 kb on + strand, within SMc01794at 1341.033 kb on + strand, within SMc01794at 1341.034 kb on - strand, within SMc01794at 1341.034 kb on - strand, within SMc01794at 1341.077 kb on + strand, within SMc01794at 1341.077 kb on + strand, within SMc01794at 1341.098 kb on + strand, within SMc01794at 1341.098 kb on + strand, within SMc01794at 1341.098 kb on + strand, within SMc01794at 1341.099 kb on - strand, within SMc01794at 1341.099 kb on - strand, within SMc01794at 1341.209 kb on + strand, within SMc01794at 1341.341 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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1,338,575 + SMc01792 0.42 +1.0
1,338,576 - SMc01792 0.42 -0.4
1,338,944 + SMc01792 0.66 +0.1
1,338,945 - SMc01792 0.66 +0.2
1,339,019 + SMc01792 0.71 +0.1
1,339,020 - SMc01792 0.71 +0.5
1,339,137 - SMc01792 0.78 -0.5
1,339,137 - SMc01792 0.78 -0.1
1,339,137 - SMc01792 0.78 +0.3
1,339,199 + SMc01792 0.82 +0.0
1,339,199 + SMc01792 0.82 -0.1
1,339,199 + SMc01792 0.82 +0.7
1,339,200 - SMc01792 0.82 -0.4
1,339,232 + SMc01792 0.84 +0.5
1,339,232 + SMc01792 0.84 -0.5
1,339,233 - SMc01792 0.84 -0.3
1,339,314 + SMc01792 0.89 -0.9
1,339,314 + SMc01792 0.89 -0.2
1,339,314 + SMc01792 0.89 +0.7
1,339,316 + SMc01792 0.90 -0.1
1,339,316 + SMc01792 0.90 -0.2
1,339,316 + SMc01792 0.90 +0.0
1,339,317 - SMc01792 0.90 +0.0
1,339,317 - SMc01792 0.90 +0.2
1,339,317 - SMc01792 0.90 +0.6
1,339,317 - +1.4
1,339,539 + -0.2
1,339,539 + +0.3
1,339,547 - +0.2
1,339,799 + SMc01793 0.22 -0.5
1,339,800 - SMc01793 0.22 +0.5
1,339,834 + SMc01793 0.25 -0.2
1,339,834 + SMc01793 0.25 +1.0
1,339,835 - SMc01793 0.25 +1.5
1,339,836 + SMc01793 0.25 +0.0
1,339,836 + SMc01793 0.25 +1.5
1,339,836 + SMc01793 0.25 +0.1
1,339,837 - SMc01793 0.26 +0.1
1,339,837 - SMc01793 0.26 +0.1
1,339,963 - SMc01793 0.36 +0.6
1,340,089 - SMc01793 0.47 +0.5
1,340,152 + SMc01793 0.52 +0.2
1,340,154 + SMc01793 0.53 +2.0
1,340,154 + SMc01793 0.53 +0.6
1,340,154 + SMc01793 0.53 -0.0
1,340,155 - SMc01793 0.53 -0.6
1,340,200 - SMc01793 0.57 -0.0
1,340,200 - SMc01793 0.57 -0.5
1,340,215 - SMc01793 0.58 +0.1
1,340,331 + SMc01793 0.68 -0.5
1,340,420 + SMc01793 0.75 -0.7
1,340,420 + SMc01793 0.75 +0.3
1,340,421 - SMc01793 0.75 -0.9
1,340,421 - SMc01793 0.75 +0.5
1,340,651 + -0.5
1,340,732 - -0.6
1,340,733 + -0.1
1,340,733 + +0.6
1,340,733 + +0.3
1,340,734 - -0.3
1,340,734 - +0.3
1,340,734 - -0.0
1,340,736 - +0.5
1,340,736 - -1.1
1,340,736 - +2.0
1,340,736 - +2.0
1,340,736 - -0.5
1,340,875 + SMc01794 0.28 -1.7
1,340,875 + SMc01794 0.28 -0.9
1,340,875 + SMc01794 0.28 +1.1
1,340,894 + SMc01794 0.31 -0.0
1,340,894 + SMc01794 0.31 -0.1
1,340,895 - SMc01794 0.32 +0.1
1,340,895 - SMc01794 0.32 -0.7
1,340,895 - SMc01794 0.32 -0.2
1,340,895 - SMc01794 0.32 +0.7
1,340,900 + SMc01794 0.32 +0.2
1,341,033 + SMc01794 0.56 -1.1
1,341,034 - SMc01794 0.56 -0.5
1,341,034 - SMc01794 0.56 +0.6
1,341,077 + SMc01794 0.63 -0.1
1,341,077 + SMc01794 0.63 +0.1
1,341,098 + SMc01794 0.67 +0.4
1,341,098 + SMc01794 0.67 -0.9
1,341,098 + SMc01794 0.67 -0.6
1,341,099 - SMc01794 0.67 -0.3
1,341,099 - SMc01794 0.67 +1.5
1,341,209 + SMc01794 0.86 -0.6
1,341,341 - -0.0

Or see this region's nucleotide sequence