Strain Fitness in Sinorhizobium meliloti 1021 around SMa5032

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1789 and SMa5032 are separated by 552 nucleotidesSMa5032 and SMa1793 are separated by 383 nucleotides SMa1789: SMa1789 - CyaI4 adenylate/guanylate cyclase, at 1,012,465 to 1,015,821 SMa1789 SMa5032: SMa5032 - hypothetical protein, at 1,016,374 to 1,016,556 SMa5032 SMa1793: SMa1793 - hypothetical protein, at 1,016,940 to 1,017,362 SMa1793 Position (kb) 1016 1017Strain fitness (log2 ratio) -1 0 1at 1015.611 kb on + strandat 1015.611 kb on + strandat 1015.611 kb on + strandat 1015.612 kb on - strandat 1015.748 kb on - strandat 1015.774 kb on - strandat 1015.814 kb on + strandat 1015.858 kb on + strandat 1015.859 kb on - strandat 1015.859 kb on - strandat 1015.862 kb on - strandat 1015.888 kb on + strandat 1015.889 kb on - strandat 1015.933 kb on - strandat 1016.080 kb on + strandat 1016.081 kb on - strandat 1016.104 kb on + strandat 1016.105 kb on - strandat 1016.105 kb on - strandat 1016.105 kb on - strandat 1016.113 kb on + strandat 1016.113 kb on + strandat 1016.113 kb on + strandat 1016.113 kb on + strandat 1016.114 kb on - strandat 1016.115 kb on + strandat 1016.115 kb on + strandat 1016.207 kb on + strandat 1016.208 kb on - strandat 1016.320 kb on - strandat 1016.320 kb on - strandat 1016.415 kb on + strand, within SMa5032at 1016.415 kb on + strand, within SMa5032at 1016.484 kb on - strand, within SMa5032at 1016.524 kb on - strand, within SMa5032at 1016.648 kb on + strandat 1016.649 kb on - strandat 1016.691 kb on + strandat 1016.691 kb on + strandat 1016.715 kb on - strandat 1016.825 kb on + strandat 1016.826 kb on - strandat 1016.826 kb on - strandat 1016.826 kb on - strandat 1016.826 kb on - strandat 1016.826 kb on - strandat 1016.826 kb on - strandat 1016.826 kb on - strandat 1016.847 kb on + strandat 1016.861 kb on + strandat 1016.926 kb on + strandat 1016.926 kb on + strandat 1016.957 kb on + strandat 1016.957 kb on + strandat 1016.982 kb on - strandat 1016.982 kb on - strandat 1017.036 kb on + strand, within SMa1793at 1017.036 kb on + strand, within SMa1793at 1017.037 kb on - strand, within SMa1793at 1017.118 kb on - strand, within SMa1793at 1017.119 kb on + strand, within SMa1793at 1017.119 kb on + strand, within SMa1793at 1017.178 kb on + strand, within SMa1793at 1017.179 kb on - strand, within SMa1793at 1017.361 kb on - strandat 1017.361 kb on - strandat 1017.397 kb on + strandat 1017.397 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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1,015,611 + -1.1
1,015,611 + +0.1
1,015,611 + +0.6
1,015,612 - +0.9
1,015,748 - -0.3
1,015,774 - -0.8
1,015,814 + +0.2
1,015,858 + -1.0
1,015,859 - -1.6
1,015,859 - +0.6
1,015,862 - +1.3
1,015,888 + +1.4
1,015,889 - +0.6
1,015,933 - -0.0
1,016,080 + -1.1
1,016,081 - -0.7
1,016,104 + -0.1
1,016,105 - -0.4
1,016,105 - -0.5
1,016,105 - +0.3
1,016,113 + -0.2
1,016,113 + +0.5
1,016,113 + -0.1
1,016,113 + +0.2
1,016,114 - -1.0
1,016,115 + -0.5
1,016,115 + +0.6
1,016,207 + +0.9
1,016,208 - +0.4
1,016,320 - -0.0
1,016,320 - +0.3
1,016,415 + SMa5032 0.22 +0.2
1,016,415 + SMa5032 0.22 +1.4
1,016,484 - SMa5032 0.60 +1.4
1,016,524 - SMa5032 0.82 +0.1
1,016,648 + +0.5
1,016,649 - -0.0
1,016,691 + -0.2
1,016,691 + -0.0
1,016,715 - -0.7
1,016,825 + -0.3
1,016,826 - +0.5
1,016,826 - -0.2
1,016,826 - +0.8
1,016,826 - -0.6
1,016,826 - -0.0
1,016,826 - +0.2
1,016,826 - -0.8
1,016,847 + +0.4
1,016,861 + +0.1
1,016,926 + +0.7
1,016,926 + -0.1
1,016,957 + +0.4
1,016,957 + -0.7
1,016,982 - +0.7
1,016,982 - -1.2
1,017,036 + SMa1793 0.23 +0.9
1,017,036 + SMa1793 0.23 -0.2
1,017,037 - SMa1793 0.23 -0.4
1,017,118 - SMa1793 0.42 -1.5
1,017,119 + SMa1793 0.42 -0.1
1,017,119 + SMa1793 0.42 +0.6
1,017,178 + SMa1793 0.56 +0.9
1,017,179 - SMa1793 0.57 -1.0
1,017,361 - +0.2
1,017,361 - -0.3
1,017,397 + -0.0
1,017,397 + +0.1

Or see this region's nucleotide sequence