Strain Fitness in Sinorhizobium meliloti 1021 around SMa1907

Experiment: 3-octanone 5.310333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1905 and SMa1907 are separated by 658 nucleotides SMa1905: SMa1905 - MrcB penicillin binding protein B, at 1,082,806 to 1,085,151 SMa1905 SMa1907: SMa1907 - hypothetical protein, at 1,085,810 to 1,086,190 SMa1907 Position (kb) 1085 1086 1087Strain fitness (log2 ratio) -2 -1 0 1 2at 1084.954 kb on - strandat 1085.062 kb on - strandat 1085.062 kb on - strandat 1085.080 kb on + strandat 1085.080 kb on + strandat 1085.080 kb on + strandat 1085.081 kb on - strandat 1085.110 kb on + strandat 1085.111 kb on - strandat 1085.149 kb on + strandat 1085.247 kb on - strandat 1085.377 kb on - strandat 1085.377 kb on - strandat 1085.378 kb on + strandat 1085.379 kb on - strandat 1085.431 kb on - strandat 1085.431 kb on - strandat 1085.431 kb on - strandat 1085.503 kb on + strandat 1085.503 kb on + strandat 1085.812 kb on - strandat 1085.994 kb on + strand, within SMa1907at 1085.995 kb on - strand, within SMa1907at 1086.046 kb on + strand, within SMa1907at 1086.126 kb on + strand, within SMa1907at 1086.134 kb on - strand, within SMa1907at 1086.171 kb on - strandat 1086.171 kb on - strandat 1086.171 kb on - strandat 1086.195 kb on - strandat 1086.678 kb on + strandat 1086.685 kb on + strandat 1086.685 kb on + strandat 1086.685 kb on + strandat 1086.686 kb on - strandat 1086.687 kb on + strandat 1086.688 kb on - strandat 1086.688 kb on - strandat 1086.688 kb on - strandat 1086.688 kb on - strandat 1086.989 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.009 kb on + strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.010 kb on - strandat 1087.011 kb on + strandat 1087.011 kb on + strandat 1087.012 kb on - strandat 1087.012 kb on - strandat 1087.013 kb on + strandat 1087.013 kb on + strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.014 kb on - strandat 1087.064 kb on + strandat 1087.065 kb on - strandat 1087.065 kb on - strandat 1087.078 kb on - strandat 1087.136 kb on - strandat 1087.136 kb on - strandat 1087.139 kb on + strandat 1087.175 kb on - strandat 1087.185 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
remove
1,084,954 - +1.0
1,085,062 - +0.2
1,085,062 - +0.1
1,085,080 + -0.2
1,085,080 + +1.2
1,085,080 + -0.2
1,085,081 - +0.3
1,085,110 + +0.3
1,085,111 - +0.7
1,085,149 + -0.9
1,085,247 - +0.1
1,085,377 - +0.4
1,085,377 - -0.5
1,085,378 + -0.2
1,085,379 - -0.2
1,085,431 - +0.4
1,085,431 - +0.6
1,085,431 - +0.1
1,085,503 + -0.2
1,085,503 + -0.0
1,085,812 - +0.9
1,085,994 + SMa1907 0.48 +0.1
1,085,995 - SMa1907 0.49 -1.3
1,086,046 + SMa1907 0.62 -0.3
1,086,126 + SMa1907 0.83 -2.1
1,086,134 - SMa1907 0.85 -0.0
1,086,171 - -0.4
1,086,171 - +0.7
1,086,171 - -0.3
1,086,195 - -0.1
1,086,678 + +1.4
1,086,685 + -1.2
1,086,685 + -0.7
1,086,685 + +0.4
1,086,686 - +0.6
1,086,687 + -1.8
1,086,688 - -0.7
1,086,688 - +0.6
1,086,688 - -1.3
1,086,688 - +0.0
1,086,989 + +0.1
1,087,009 + -0.0
1,087,009 + -0.0
1,087,009 + -1.4
1,087,009 + -0.4
1,087,009 + -0.1
1,087,009 + +0.6
1,087,009 + +0.4
1,087,010 - -0.6
1,087,010 - -0.6
1,087,010 - +0.1
1,087,010 - +2.0
1,087,011 + -0.8
1,087,011 + -0.6
1,087,012 - -0.3
1,087,012 - -0.2
1,087,013 + -0.9
1,087,013 + -0.1
1,087,014 - -1.2
1,087,014 - +0.8
1,087,014 - +0.5
1,087,014 - -0.0
1,087,064 + +0.3
1,087,065 - -0.7
1,087,065 - -0.0
1,087,078 - -0.9
1,087,136 - -0.5
1,087,136 - -0.2
1,087,139 + -0.4
1,087,175 - -0.4
1,087,185 + +0.4

Or see this region's nucleotide sequence