Strain Fitness in Sinorhizobium meliloti 1021 around SMa0779

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0776 and SMa0779 are separated by 12 nucleotidesSMa0779 and SMa5028 overlap by 183 nucleotidesSMa5028 and SMa0781 are separated by 180 nucleotidesSMa0781 and SMa0783 are separated by 22 nucleotides SMa0776: SMa0776 - TRm23b IS ATP-binding protein, at 423,440 to 424,177 SMa0776 SMa0779: SMa0779 - hypothetical protein, at 424,190 to 425,086 SMa0779 SMa5028: SMa5028 - hypothetical protein, at 424,904 to 425,281 SMa5028 SMa0781: SMa0781 - hypothetical protein, at 425,462 to 425,911 SMa0781 SMa0783: SMa0783 - hypothetical protein, at 425,934 to 426,203 SMa0783 Position (kb) 424 425 426Strain fitness (log2 ratio) -1 0 1 2at 423.307 kb on + strandat 423.549 kb on - strand, within SMa0776at 424.540 kb on + strand, within SMa0779at 424.540 kb on + strand, within SMa0779at 424.752 kb on + strand, within SMa0779at 424.898 kb on + strand, within SMa0779at 424.900 kb on + strand, within SMa0779at 425.000 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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423,307 + -1.0
423,549 - SMa0776 0.15 -0.6
424,540 + SMa0779 0.39 +0.6
424,540 + SMa0779 0.39 -1.2
424,752 + SMa0779 0.63 +0.3
424,898 + SMa0779 0.79 +2.0
424,900 + SMa0779 0.79 +0.3
425,000 - -0.8

Or see this region's nucleotide sequence