Strain Fitness in Sinorhizobium meliloti 1021 around SMa0291

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0288 and SMa0291 are separated by 274 nucleotidesSMa0291 and SMa0293 are separated by 288 nucleotides SMa0288: SMa0288 - hypothetical protein, at 160,505 to 161,341 SMa0288 SMa0291: SMa0291 - hypothetical protein, at 161,616 to 161,984 SMa0291 SMa0293: SMa0293 - hypothetical protein, at 162,273 to 162,668 SMa0293 Position (kb) 161 162Strain fitness (log2 ratio) -1 0 1at 160.663 kb on + strand, within SMa0288at 160.663 kb on + strand, within SMa0288at 160.664 kb on - strand, within SMa0288at 160.735 kb on - strand, within SMa0288at 160.751 kb on + strand, within SMa0288at 160.752 kb on - strand, within SMa0288at 160.803 kb on + strand, within SMa0288at 160.804 kb on - strand, within SMa0288at 160.891 kb on - strand, within SMa0288at 160.891 kb on - strand, within SMa0288at 161.063 kb on + strand, within SMa0288at 161.063 kb on + strand, within SMa0288at 161.064 kb on - strand, within SMa0288at 161.064 kb on - strand, within SMa0288at 161.139 kb on + strand, within SMa0288at 161.140 kb on - strand, within SMa0288at 161.140 kb on - strand, within SMa0288at 161.174 kb on + strand, within SMa0288at 161.174 kb on + strand, within SMa0288at 161.183 kb on + strand, within SMa0288at 161.184 kb on - strand, within SMa0288at 161.184 kb on - strand, within SMa0288at 161.243 kb on + strand, within SMa0288at 161.362 kb on + strandat 161.363 kb on - strandat 161.543 kb on + strandat 161.571 kb on + strandat 161.571 kb on + strandat 161.615 kb on + strandat 161.616 kb on - strandat 161.643 kb on - strandat 161.691 kb on + strand, within SMa0291at 161.876 kb on - strand, within SMa0291at 161.955 kb on - strandat 161.982 kb on + strandat 161.982 kb on + strandat 161.982 kb on + strandat 161.983 kb on - strandat 161.983 kb on - strandat 162.007 kb on + strandat 162.008 kb on - strandat 162.031 kb on - strandat 162.085 kb on + strandat 162.262 kb on - strandat 162.274 kb on + strandat 162.369 kb on - strand, within SMa0293at 162.374 kb on + strand, within SMa0293at 162.421 kb on + strand, within SMa0293at 162.514 kb on - strand, within SMa0293at 162.599 kb on + strand, within SMa0293at 162.651 kb on + strandat 162.651 kb on + strandat 162.686 kb on + strandat 162.687 kb on - strandat 162.687 kb on - strandat 162.820 kb on - strandat 162.839 kb on - strandat 162.976 kb on + strandat 162.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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160,663 + SMa0288 0.19 -0.6
160,663 + SMa0288 0.19 -0.4
160,664 - SMa0288 0.19 +0.4
160,735 - SMa0288 0.27 +0.6
160,751 + SMa0288 0.29 +0.1
160,752 - SMa0288 0.30 +0.5
160,803 + SMa0288 0.36 +0.8
160,804 - SMa0288 0.36 -0.2
160,891 - SMa0288 0.46 +0.3
160,891 - SMa0288 0.46 +0.1
161,063 + SMa0288 0.67 +0.1
161,063 + SMa0288 0.67 +0.1
161,064 - SMa0288 0.67 +0.7
161,064 - SMa0288 0.67 -0.3
161,139 + SMa0288 0.76 +1.3
161,140 - SMa0288 0.76 -0.2
161,140 - SMa0288 0.76 -0.4
161,174 + SMa0288 0.80 +0.4
161,174 + SMa0288 0.80 -0.0
161,183 + SMa0288 0.81 +0.5
161,184 - SMa0288 0.81 +0.1
161,184 - SMa0288 0.81 +0.0
161,243 + SMa0288 0.88 -0.4
161,362 + +0.4
161,363 - -0.1
161,543 + +0.7
161,571 + +0.9
161,571 + -0.0
161,615 + +0.3
161,616 - +1.2
161,643 - -0.2
161,691 + SMa0291 0.20 +0.7
161,876 - SMa0291 0.70 -0.1
161,955 - -0.7
161,982 + -0.2
161,982 + -0.1
161,982 + +0.1
161,983 - +0.7
161,983 - +0.3
162,007 + +0.7
162,008 - -0.4
162,031 - -0.0
162,085 + +0.2
162,262 - +0.1
162,274 + +0.2
162,369 - SMa0293 0.24 +1.2
162,374 + SMa0293 0.26 -0.2
162,421 + SMa0293 0.37 -0.4
162,514 - SMa0293 0.61 -0.4
162,599 + SMa0293 0.82 +0.3
162,651 + +1.1
162,651 + +1.4
162,686 + +0.6
162,687 - +0.1
162,687 - +0.2
162,820 - +0.1
162,839 - +0.2
162,976 + +0.4
162,983 + -0.5

Or see this region's nucleotide sequence