Strain Fitness in Sinorhizobium meliloti 1021 around SMa0095

Experiment: 3-octanone 5.310333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa0093 and SMa0095 are separated by 50 nucleotidesSMa0095 and SMa0097 are separated by 16 nucleotides SMa0093: SMa0093 - Branched-chain amino acid aminotransferase, at 48,182 to 49,033 SMa0093 SMa0095: SMa0095 - D-aminopeptidase, at 49,084 to 50,121 SMa0095 SMa0097: SMa0097 - LysR family transcriptional regulator, at 50,138 to 51,079 SMa0097 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2at 48.197 kb on + strandat 48.197 kb on + strandat 48.278 kb on + strand, within SMa0093at 48.279 kb on - strand, within SMa0093at 48.279 kb on - strand, within SMa0093at 48.450 kb on - strand, within SMa0093at 48.767 kb on - strand, within SMa0093at 49.005 kb on - strandat 49.032 kb on - strandat 49.281 kb on + strand, within SMa0095at 50.007 kb on + strand, within SMa0095at 50.008 kb on - strand, within SMa0095at 50.077 kb on + strandat 50.180 kb on + strandat 50.180 kb on + strandat 50.181 kb on - strandat 50.181 kb on - strandat 50.540 kb on + strand, within SMa0097at 50.540 kb on + strand, within SMa0097at 50.541 kb on - strand, within SMa0097at 50.541 kb on - strand, within SMa0097at 50.541 kb on - strand, within SMa0097at 50.583 kb on - strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.788 kb on + strand, within SMa0097at 50.789 kb on - strand, within SMa0097at 50.789 kb on - strand, within SMa0097at 50.853 kb on + strand, within SMa0097at 50.853 kb on + strand, within SMa0097at 50.854 kb on - strand, within SMa0097at 50.854 kb on - strand, within SMa0097at 51.119 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
remove
48,197 + +0.2
48,197 + -0.3
48,278 + SMa0093 0.11 -0.4
48,279 - SMa0093 0.11 -0.2
48,279 - SMa0093 0.11 +0.5
48,450 - SMa0093 0.31 +2.3
48,767 - SMa0093 0.69 -0.6
49,005 - -1.1
49,032 - +0.1
49,281 + SMa0095 0.19 +0.7
50,007 + SMa0095 0.89 +0.3
50,008 - SMa0095 0.89 +0.5
50,077 + +0.4
50,180 + +0.5
50,180 + -0.3
50,181 - +0.7
50,181 - -1.1
50,540 + SMa0097 0.43 -0.1
50,540 + SMa0097 0.43 +0.9
50,541 - SMa0097 0.43 -0.1
50,541 - SMa0097 0.43 +0.4
50,541 - SMa0097 0.43 +0.2
50,583 - SMa0097 0.47 +0.3
50,640 + SMa0097 0.53 +1.1
50,640 + SMa0097 0.53 +0.6
50,640 + SMa0097 0.53 -1.4
50,640 + SMa0097 0.53 -0.9
50,788 + SMa0097 0.69 -0.3
50,789 - SMa0097 0.69 -0.7
50,789 - SMa0097 0.69 -0.2
50,853 + SMa0097 0.76 +0.2
50,853 + SMa0097 0.76 -1.5
50,854 - SMa0097 0.76 +0.2
50,854 - SMa0097 0.76 -0.0
51,119 + -1.1

Or see this region's nucleotide sequence