Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21343

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21342 and SM_b21343 are separated by 6 nucleotidesSM_b21343 and SM_b21344 are separated by 1 nucleotides SM_b21342: SM_b21342 - sugar uptake ABC transporter permease, at 1,007,763 to 1,008,761 _b21342 SM_b21343: SM_b21343 - sugar uptake ABC transporter permease, at 1,008,768 to 1,009,772 _b21343 SM_b21344: SM_b21344 - sugar uptake ABC transporter ATP-binding protein, at 1,009,774 to 1,011,267 _b21344 Position (kb) 1008 1009 1010Strain fitness (log2 ratio) -2 -1 0 1at 1007.857 kb on + strandat 1007.978 kb on + strand, within SM_b21342at 1007.991 kb on + strand, within SM_b21342at 1007.991 kb on + strand, within SM_b21342at 1007.991 kb on + strand, within SM_b21342at 1007.992 kb on - strand, within SM_b21342at 1008.103 kb on + strand, within SM_b21342at 1008.227 kb on - strand, within SM_b21342at 1008.304 kb on + strand, within SM_b21342at 1008.305 kb on - strand, within SM_b21342at 1008.353 kb on - strand, within SM_b21342at 1008.481 kb on + strand, within SM_b21342at 1008.604 kb on + strand, within SM_b21342at 1008.605 kb on - strand, within SM_b21342at 1008.629 kb on - strand, within SM_b21342at 1008.872 kb on - strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.072 kb on + strand, within SM_b21343at 1009.073 kb on - strand, within SM_b21343at 1009.101 kb on + strand, within SM_b21343at 1009.697 kb on - strandat 1009.775 kb on + strandat 1009.776 kb on - strandat 1009.776 kb on - strandat 1010.089 kb on - strand, within SM_b21344at 1010.089 kb on - strand, within SM_b21344at 1010.089 kb on - strand, within SM_b21344at 1010.132 kb on + strand, within SM_b21344at 1010.133 kb on - strand, within SM_b21344at 1010.133 kb on - strand, within SM_b21344at 1010.241 kb on + strand, within SM_b21344at 1010.331 kb on - strand, within SM_b21344at 1010.568 kb on + strand, within SM_b21344at 1010.569 kb on - strand, within SM_b21344at 1010.725 kb on + strand, within SM_b21344at 1010.726 kb on - strand, within SM_b21344at 1010.726 kb on - strand, within SM_b21344

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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1,007,857 + +0.2
1,007,978 + SM_b21342 0.22 +0.6
1,007,991 + SM_b21342 0.23 -0.3
1,007,991 + SM_b21342 0.23 -0.3
1,007,991 + SM_b21342 0.23 -0.1
1,007,992 - SM_b21342 0.23 +0.3
1,008,103 + SM_b21342 0.34 -1.4
1,008,227 - SM_b21342 0.46 -0.1
1,008,304 + SM_b21342 0.54 -1.1
1,008,305 - SM_b21342 0.54 -0.2
1,008,353 - SM_b21342 0.59 -0.2
1,008,481 + SM_b21342 0.72 -0.4
1,008,604 + SM_b21342 0.84 +1.6
1,008,605 - SM_b21342 0.84 -0.9
1,008,629 - SM_b21342 0.87 +0.9
1,008,872 - SM_b21343 0.10 -0.7
1,009,072 + SM_b21343 0.30 -0.8
1,009,072 + SM_b21343 0.30 -0.2
1,009,072 + SM_b21343 0.30 -0.7
1,009,073 - SM_b21343 0.30 -1.3
1,009,101 + SM_b21343 0.33 -0.8
1,009,697 - -0.6
1,009,775 + +1.0
1,009,776 - +0.3
1,009,776 - -2.2
1,010,089 - SM_b21344 0.21 -0.1
1,010,089 - SM_b21344 0.21 +1.3
1,010,089 - SM_b21344 0.21 -0.5
1,010,132 + SM_b21344 0.24 -0.1
1,010,133 - SM_b21344 0.24 +0.1
1,010,133 - SM_b21344 0.24 +0.8
1,010,241 + SM_b21344 0.31 -0.4
1,010,331 - SM_b21344 0.37 +0.2
1,010,568 + SM_b21344 0.53 +1.3
1,010,569 - SM_b21344 0.53 -0.4
1,010,725 + SM_b21344 0.64 -0.4
1,010,726 - SM_b21344 0.64 +0.8
1,010,726 - SM_b21344 0.64 -2.0

Or see this region's nucleotide sequence