Strain Fitness in Sinorhizobium meliloti 1021 around SMc04199

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04198 and SMc04199 are separated by 185 nucleotidesSMc04199 and SMc04200 overlap by 4 nucleotidesSMc04200 and SMc04201 are separated by 15 nucleotides SMc04198: SMc04198 - phage repressor protein, at 2,184,881 to 2,185,570 SMc04198 SMc04199: SMc04199 - hypothetical protein, at 2,185,756 to 2,186,085 SMc04199 SMc04200: SMc04200 - signal peptide protein, at 2,186,082 to 2,186,369 SMc04200 SMc04201: SMc04201 - signal peptide protein, at 2,186,385 to 2,187,110 SMc04201 Position (kb) 2185 2186 2187Strain fitness (log2 ratio) -1 0 1at 2184.756 kb on + strandat 2184.756 kb on + strandat 2184.826 kb on + strandat 2185.588 kb on - strandat 2185.746 kb on + strandat 2186.046 kb on + strand, within SMc04199at 2186.046 kb on + strand, within SMc04199at 2186.050 kb on + strand, within SMc04199at 2186.051 kb on - strand, within SMc04199at 2186.101 kb on - strandat 2186.155 kb on - strand, within SMc04200at 2186.155 kb on - strand, within SMc04200at 2186.155 kb on - strand, within SMc04200at 2186.157 kb on + strand, within SMc04200at 2186.157 kb on + strand, within SMc04200at 2186.157 kb on + strand, within SMc04200at 2186.158 kb on - strand, within SMc04200at 2186.332 kb on + strand, within SMc04200

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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2,184,756 + -0.3
2,184,756 + -0.2
2,184,826 + -0.3
2,185,588 - +0.6
2,185,746 + -0.2
2,186,046 + SMc04199 0.88 -1.1
2,186,046 + SMc04199 0.88 +0.2
2,186,050 + SMc04199 0.89 -0.7
2,186,051 - SMc04199 0.89 +0.9
2,186,101 - +0.6
2,186,155 - SMc04200 0.25 +0.1
2,186,155 - SMc04200 0.25 +0.6
2,186,155 - SMc04200 0.25 -0.1
2,186,157 + SMc04200 0.26 +0.1
2,186,157 + SMc04200 0.26 -0.8
2,186,157 + SMc04200 0.26 +0.9
2,186,158 - SMc04200 0.26 +0.6
2,186,332 + SMc04200 0.87 +0.5

Or see this region's nucleotide sequence