Strain Fitness in Sinorhizobium meliloti 1021 around SMc04020

Experiment: 3-octanone 5.310333333 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04019 and SMc04020 are separated by 103 nucleotidesSMc04020 and SMc04021 are separated by 9 nucleotidesSMc04021 and SMc04022 are separated by 104 nucleotides SMc04019: SMc04019 - ferrochelatase, at 3,016,873 to 3,017,901 SMc04019 SMc04020: SMc04020 - hypothetical protein, at 3,018,005 to 3,018,991 SMc04020 SMc04021: SMc04021 - hypothetical protein, at 3,019,001 to 3,019,456 SMc04021 SMc04022: SMc04022 - hypothetical protein, at 3,019,561 to 3,020,997 SMc04022 Position (kb) 3018 3019Strain fitness (log2 ratio) -1 0 1 2at 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.932 kb on + strandat 3017.933 kb on - strandat 3018.018 kb on - strandat 3018.099 kb on - strandat 3018.100 kb on + strandat 3018.100 kb on + strandat 3018.100 kb on + strandat 3018.101 kb on - strandat 3018.123 kb on - strand, within SMc04020at 3018.285 kb on + strand, within SMc04020at 3018.442 kb on - strand, within SMc04020at 3018.771 kb on - strand, within SMc04020at 3018.789 kb on - strand, within SMc04020at 3018.886 kb on - strand, within SMc04020at 3019.092 kb on + strand, within SMc04021at 3019.092 kb on + strand, within SMc04021at 3019.573 kb on - strandat 3019.573 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
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3,017,932 + -0.1
3,017,932 + -0.5
3,017,932 + -1.1
3,017,932 + -0.3
3,017,932 + -0.1
3,017,933 - -0.6
3,018,018 - -0.3
3,018,099 - +0.1
3,018,100 + +0.2
3,018,100 + -0.0
3,018,100 + -1.1
3,018,101 - +0.2
3,018,123 - SMc04020 0.12 +0.9
3,018,285 + SMc04020 0.28 -0.9
3,018,442 - SMc04020 0.44 +1.2
3,018,771 - SMc04020 0.78 +0.0
3,018,789 - SMc04020 0.79 +0.7
3,018,886 - SMc04020 0.89 +0.3
3,019,092 + SMc04021 0.20 -0.7
3,019,092 + SMc04021 0.20 +1.9
3,019,573 - -1.1
3,019,573 - -0.6

Or see this region's nucleotide sequence