Strain Fitness in Sinorhizobium meliloti 1021 around SMc02083

Experiment: 3-octanone 5.310333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02084 and SMc02083 are separated by 975 nucleotidesSMc02083 and SMc02082 are separated by 276 nucleotides SMc02084: SMc02084 - biopolymer transport transmembrane protein, at 1,627,335 to 1,627,760 SMc02084 SMc02083: SMc02083 - methyltransferase (PCM-like) transmembrane protein, at 1,628,736 to 1,629,395 SMc02083 SMc02082: SMc02082 - outer membrane secretion protein, at 1,629,672 to 1,631,042 SMc02082 Position (kb) 1628 1629 1630Strain fitness (log2 ratio) -1 0 1at 1627.903 kb on + strandat 1627.913 kb on + strandat 1627.913 kb on + strandat 1627.914 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1628.045 kb on - strandat 1628.045 kb on - strandat 1628.180 kb on - strandat 1628.180 kb on - strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.322 kb on + strandat 1628.322 kb on + strandat 1628.371 kb on + strandat 1628.372 kb on - strandat 1628.372 kb on - strandat 1628.390 kb on + strandat 1628.545 kb on + strandat 1629.414 kb on - strandat 1629.438 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
remove
1,627,903 + +0.5
1,627,913 + +0.1
1,627,913 + +0.2
1,627,914 - -0.0
1,627,936 - -0.5
1,627,936 - -0.7
1,627,936 - +0.6
1,627,936 - +0.2
1,627,936 - -0.1
1,627,936 - +0.4
1,628,045 - -0.0
1,628,045 - -0.2
1,628,180 - -0.4
1,628,180 - +0.6
1,628,316 + -0.8
1,628,316 + -0.1
1,628,316 + +0.3
1,628,316 + -0.4
1,628,316 + +0.1
1,628,316 + +0.2
1,628,316 + -0.1
1,628,322 + +0.8
1,628,322 + +0.0
1,628,371 + -0.4
1,628,372 - +0.1
1,628,372 - +1.3
1,628,390 + +0.4
1,628,545 + +0.3
1,629,414 - -0.0
1,629,438 + -0.5

Or see this region's nucleotide sequence