Strain Fitness in Sinorhizobium meliloti 1021 around SMa1174

Experiment: 3-octanone 5.310333333 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1169 and SMa1170 are separated by 61 nucleotidesSMa1170 and SMa1171 are separated by 2 nucleotidesSMa1171 and SMa1172 overlap by 4 nucleotidesSMa1172 and SMa1174 overlap by 80 nucleotidesSMa1174 and SMa1176 are separated by 561 nucleotides SMa1169: SMa1169 - hypothetical protein, at 641,662 to 642,003 SMa1169 SMa1170: SMa1170 - hypothetical protein, at 642,065 to 642,382 SMa1170 SMa1171: SMa1171 - hypothetical protein, at 642,385 to 642,645 SMa1171 SMa1172: SMa1172 - hypothetical protein, at 642,642 to 642,890 SMa1172 SMa1174: SMa1174 - hypothetical protein, at 642,811 to 643,314 SMa1174 SMa1176: SMa1176 - hypothetical protein, at 643,876 to 644,394 SMa1176 Position (kb) 642 643 644Strain fitness (log2 ratio) -2 -1 0 1at 641.875 kb on + strand, within SMa1169at 641.875 kb on + strand, within SMa1169at 641.875 kb on + strand, within SMa1169at 641.875 kb on + strand, within SMa1169at 641.875 kb on + strand, within SMa1169at 641.928 kb on - strand, within SMa1169at 642.008 kb on + strandat 642.050 kb on + strandat 642.075 kb on + strandat 642.075 kb on + strandat 642.181 kb on + strand, within SMa1170at 642.226 kb on + strand, within SMa1170at 642.327 kb on + strand, within SMa1170at 642.365 kb on + strandat 642.369 kb on + strandat 642.369 kb on + strandat 642.370 kb on - strandat 642.370 kb on - strandat 642.381 kb on - strandat 642.381 kb on - strandat 642.386 kb on + strandat 642.464 kb on + strand, within SMa1171at 642.465 kb on - strand, within SMa1171at 642.465 kb on - strand, within SMa1171at 642.471 kb on - strand, within SMa1171at 642.914 kb on - strand, within SMa1174at 643.192 kb on - strand, within SMa1174at 643.259 kb on - strand, within SMa1174at 643.372 kb on + strandat 643.373 kb on - strandat 643.373 kb on - strandat 643.433 kb on + strandat 643.433 kb on + strandat 643.433 kb on + strandat 643.433 kb on + strandat 643.433 kb on + strandat 643.433 kb on + strandat 643.433 kb on + strandat 643.433 kb on + strandat 643.434 kb on - strandat 643.434 kb on - strandat 643.434 kb on - strandat 643.434 kb on - strandat 643.434 kb on - strandat 643.488 kb on + strandat 643.488 kb on + strandat 643.600 kb on - strandat 643.650 kb on + strandat 643.650 kb on + strandat 643.698 kb on + strandat 643.725 kb on - strandat 643.994 kb on - strand, within SMa1176at 644.183 kb on + strand, within SMa1176at 644.256 kb on + strand, within SMa1176

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 5.310333333 mM
remove
641,875 + SMa1169 0.62 +0.1
641,875 + SMa1169 0.62 +0.1
641,875 + SMa1169 0.62 -0.1
641,875 + SMa1169 0.62 -0.1
641,875 + SMa1169 0.62 -0.5
641,928 - SMa1169 0.78 +0.6
642,008 + +0.7
642,050 + +0.6
642,075 + -0.2
642,075 + -0.7
642,181 + SMa1170 0.36 +0.3
642,226 + SMa1170 0.51 +0.3
642,327 + SMa1170 0.82 -0.3
642,365 + +0.7
642,369 + -0.3
642,369 + -0.5
642,370 - +0.1
642,370 - -1.2
642,381 - -0.2
642,381 - -1.8
642,386 + -0.2
642,464 + SMa1171 0.30 +1.1
642,465 - SMa1171 0.31 -0.5
642,465 - SMa1171 0.31 +0.2
642,471 - SMa1171 0.33 -0.5
642,914 - SMa1174 0.20 -0.1
643,192 - SMa1174 0.76 -1.3
643,259 - SMa1174 0.89 -0.4
643,372 + +0.3
643,373 - -0.6
643,373 - +0.6
643,433 + +0.2
643,433 + -0.6
643,433 + -0.5
643,433 + -0.3
643,433 + +0.1
643,433 + +0.1
643,433 + -0.5
643,433 + +0.1
643,434 - -0.2
643,434 - +0.1
643,434 - -1.9
643,434 - -0.4
643,434 - +0.6
643,488 + +0.6
643,488 + +0.3
643,600 - +0.9
643,650 + +0.4
643,650 + +0.6
643,698 + -1.0
643,725 - +0.4
643,994 - SMa1176 0.23 +0.8
644,183 + SMa1176 0.59 -0.4
644,256 + SMa1176 0.73 +1.2

Or see this region's nucleotide sequence