Strain Fitness in Sinorhizobium meliloti 1021 around SMc02080

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02081 and SMc02080 are separated by 313 nucleotidesSMc02080 and SMc02079 are separated by 470 nucleotides SMc02081: SMc02081 - hypothetical protein, at 1,631,267 to 1,632,022 SMc02081 SMc02080: SMc02080 - valyl-tRNA synthetase, at 1,632,336 to 1,635,179 SMc02080 SMc02079: SMc02079 - hypothetical protein, at 1,635,650 to 1,636,939 SMc02079 Position (kb) 1632 1633 1634 1635 1636Strain fitness (log2 ratio) -2 -1 0 1 2at 1632.025 kb on + strandat 1632.160 kb on + strandat 1632.223 kb on + strandat 1635.244 kb on + strandat 1635.292 kb on + strandat 1635.293 kb on - strandat 1635.293 kb on - strandat 1635.473 kb on + strandat 1635.586 kb on - strandat 1635.677 kb on - strandat 1635.748 kb on + strandat 1635.749 kb on - strandat 1635.752 kb on - strandat 1635.803 kb on + strand, within SMc02079at 1635.803 kb on + strand, within SMc02079at 1635.803 kb on + strand, within SMc02079at 1635.803 kb on + strand, within SMc02079at 1635.804 kb on - strand, within SMc02079at 1635.804 kb on - strand, within SMc02079at 1635.820 kb on + strand, within SMc02079at 1635.821 kb on - strand, within SMc02079at 1635.834 kb on + strand, within SMc02079at 1635.865 kb on - strand, within SMc02079at 1635.865 kb on - strand, within SMc02079at 1635.932 kb on + strand, within SMc02079at 1635.932 kb on + strand, within SMc02079at 1635.933 kb on - strand, within SMc02079at 1635.933 kb on - strand, within SMc02079at 1635.956 kb on - strand, within SMc02079at 1635.956 kb on - strand, within SMc02079at 1635.956 kb on - strand, within SMc02079at 1635.976 kb on + strand, within SMc02079at 1635.976 kb on + strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.977 kb on - strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.985 kb on + strand, within SMc02079at 1635.996 kb on - strand, within SMc02079at 1635.996 kb on - strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.085 kb on + strand, within SMc02079at 1636.086 kb on - strand, within SMc02079at 1636.103 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.105 kb on + strand, within SMc02079at 1636.106 kb on - strand, within SMc02079at 1636.127 kb on + strand, within SMc02079at 1636.139 kb on - strand, within SMc02079at 1636.139 kb on - strand, within SMc02079at 1636.155 kb on - strand, within SMc02079at 1636.155 kb on - strand, within SMc02079

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,632,025 + +0.1
1,632,160 + +0.1
1,632,223 + -0.0
1,635,244 + +0.8
1,635,292 + +0.4
1,635,293 - -0.6
1,635,293 - +0.5
1,635,473 + -0.3
1,635,586 - +0.1
1,635,677 - +1.1
1,635,748 + -0.0
1,635,749 - +0.4
1,635,752 - -1.0
1,635,803 + SMc02079 0.12 +0.2
1,635,803 + SMc02079 0.12 +0.8
1,635,803 + SMc02079 0.12 -0.2
1,635,803 + SMc02079 0.12 -1.8
1,635,804 - SMc02079 0.12 -1.4
1,635,804 - SMc02079 0.12 +0.2
1,635,820 + SMc02079 0.13 -0.1
1,635,821 - SMc02079 0.13 +0.2
1,635,834 + SMc02079 0.14 +0.1
1,635,865 - SMc02079 0.17 -0.1
1,635,865 - SMc02079 0.17 -1.3
1,635,932 + SMc02079 0.22 -0.0
1,635,932 + SMc02079 0.22 -0.1
1,635,933 - SMc02079 0.22 -0.4
1,635,933 - SMc02079 0.22 -0.5
1,635,956 - SMc02079 0.24 -2.4
1,635,956 - SMc02079 0.24 -0.8
1,635,956 - SMc02079 0.24 +1.0
1,635,976 + SMc02079 0.25 -0.1
1,635,976 + SMc02079 0.25 +0.1
1,635,977 - SMc02079 0.25 +0.2
1,635,977 - SMc02079 0.25 +0.4
1,635,977 - SMc02079 0.25 -0.6
1,635,977 - SMc02079 0.25 +1.3
1,635,985 + SMc02079 0.26 -0.6
1,635,985 + SMc02079 0.26 -0.6
1,635,985 + SMc02079 0.26 -0.6
1,635,985 + SMc02079 0.26 -0.2
1,635,996 - SMc02079 0.27 +2.0
1,635,996 - SMc02079 0.27 -0.5
1,636,085 + SMc02079 0.34 -0.1
1,636,085 + SMc02079 0.34 +1.0
1,636,085 + SMc02079 0.34 -0.3
1,636,085 + SMc02079 0.34 +0.1
1,636,086 - SMc02079 0.34 +0.1
1,636,103 + SMc02079 0.35 +0.6
1,636,105 + SMc02079 0.35 -0.0
1,636,105 + SMc02079 0.35 -0.3
1,636,105 + SMc02079 0.35 -0.0
1,636,105 + SMc02079 0.35 +1.1
1,636,106 - SMc02079 0.35 -0.7
1,636,127 + SMc02079 0.37 +2.2
1,636,139 - SMc02079 0.38 -0.9
1,636,139 - SMc02079 0.38 +1.3
1,636,155 - SMc02079 0.39 -0.8
1,636,155 - SMc02079 0.39 -1.1

Or see this region's nucleotide sequence