Strain Fitness in Sinorhizobium meliloti 1021 around SMc01510

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01511 and SMc01510 are separated by 8 nucleotidesSMc01510 and SMc01509 are separated by 206 nucleotidesSMc01509 and SMc01508 are separated by 47 nucleotides SMc01511: SMc01511 - hemin transport system permease transmembrane protein, at 2,618,550 to 2,619,650 SMc01511 SMc01510: SMc01510 - hemin importer ATP-binding subunit, at 2,619,659 to 2,620,447 SMc01510 SMc01509: SMc01509 - hypothetical protein, at 2,620,654 to 2,621,016 SMc01509 SMc01508: SMc01508 - hypothetical protein, at 2,621,064 to 2,621,495 SMc01508 Position (kb) 2619 2620 2621Strain fitness (log2 ratio) -2 -1 0 1 2at 2618.991 kb on + strand, within SMc01511at 2618.991 kb on + strand, within SMc01511at 2618.991 kb on + strand, within SMc01511at 2618.991 kb on + strand, within SMc01511at 2618.991 kb on + strand, within SMc01511at 2618.992 kb on - strand, within SMc01511at 2618.992 kb on - strand, within SMc01511at 2618.992 kb on - strand, within SMc01511at 2618.992 kb on - strand, within SMc01511at 2618.992 kb on - strand, within SMc01511at 2618.992 kb on - strand, within SMc01511at 2618.992 kb on - strand, within SMc01511at 2619.139 kb on + strand, within SMc01511at 2619.139 kb on + strand, within SMc01511at 2619.321 kb on + strand, within SMc01511at 2619.478 kb on - strand, within SMc01511at 2620.049 kb on + strand, within SMc01510at 2620.050 kb on - strand, within SMc01510at 2620.050 kb on - strand, within SMc01510at 2620.142 kb on + strand, within SMc01510at 2620.142 kb on + strand, within SMc01510at 2620.142 kb on + strand, within SMc01510at 2620.143 kb on - strand, within SMc01510at 2620.143 kb on - strand, within SMc01510at 2620.143 kb on - strand, within SMc01510at 2620.267 kb on + strand, within SMc01510at 2620.267 kb on + strand, within SMc01510at 2620.267 kb on + strand, within SMc01510at 2620.268 kb on - strand, within SMc01510at 2620.422 kb on + strandat 2620.445 kb on + strandat 2620.445 kb on + strandat 2620.445 kb on + strandat 2620.445 kb on + strandat 2620.446 kb on - strandat 2620.479 kb on - strandat 2620.527 kb on - strandat 2620.742 kb on + strand, within SMc01509at 2620.906 kb on + strand, within SMc01509at 2621.046 kb on - strandat 2621.046 kb on - strandat 2621.058 kb on + strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.059 kb on - strandat 2621.064 kb on - strandat 2621.131 kb on - strand, within SMc01508at 2621.133 kb on - strand, within SMc01508at 2621.184 kb on + strand, within SMc01508at 2621.230 kb on - strand, within SMc01508

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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2,618,991 + SMc01511 0.40 -0.6
2,618,991 + SMc01511 0.40 -1.4
2,618,991 + SMc01511 0.40 +0.2
2,618,991 + SMc01511 0.40 -0.4
2,618,991 + SMc01511 0.40 -0.5
2,618,992 - SMc01511 0.40 -1.1
2,618,992 - SMc01511 0.40 +0.0
2,618,992 - SMc01511 0.40 -0.4
2,618,992 - SMc01511 0.40 +0.1
2,618,992 - SMc01511 0.40 +0.9
2,618,992 - SMc01511 0.40 -0.9
2,618,992 - SMc01511 0.40 +0.2
2,619,139 + SMc01511 0.53 +0.2
2,619,139 + SMc01511 0.53 -0.2
2,619,321 + SMc01511 0.70 +0.4
2,619,478 - SMc01511 0.84 +0.1
2,620,049 + SMc01510 0.49 +0.2
2,620,050 - SMc01510 0.50 +0.1
2,620,050 - SMc01510 0.50 +0.1
2,620,142 + SMc01510 0.61 -1.6
2,620,142 + SMc01510 0.61 -0.3
2,620,142 + SMc01510 0.61 -0.3
2,620,143 - SMc01510 0.61 +0.0
2,620,143 - SMc01510 0.61 -0.1
2,620,143 - SMc01510 0.61 -0.3
2,620,267 + SMc01510 0.77 -0.6
2,620,267 + SMc01510 0.77 -0.3
2,620,267 + SMc01510 0.77 -0.2
2,620,268 - SMc01510 0.77 -0.6
2,620,422 + -0.1
2,620,445 + -0.2
2,620,445 + +0.6
2,620,445 + +0.4
2,620,445 + -1.1
2,620,446 - +0.5
2,620,479 - +0.2
2,620,527 - +0.8
2,620,742 + SMc01509 0.24 -0.1
2,620,906 + SMc01509 0.69 -0.7
2,621,046 - +0.4
2,621,046 - +0.1
2,621,058 + -0.6
2,621,059 - +0.4
2,621,059 - +0.6
2,621,059 - -2.1
2,621,059 - +0.3
2,621,059 - +2.0
2,621,064 - +0.4
2,621,131 - SMc01508 0.16 -0.4
2,621,133 - SMc01508 0.16 +0.6
2,621,184 + SMc01508 0.28 -0.4
2,621,230 - SMc01508 0.38 +0.9

Or see this region's nucleotide sequence