Strain Fitness in Sinorhizobium meliloti 1021 around SMc01093

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01094 and SMc01093 are separated by 51 nucleotidesSMc01093 and SMc01092 are separated by 157 nucleotides SMc01094: SMc01094 - multidrug efflux system transmembrane protein, at 464,417 to 465,625 SMc01094 SMc01093: SMc01093 - esterase, at 465,677 to 466,492 SMc01093 SMc01092: SMc01092 - transcriptional regulator, at 466,650 to 467,540 SMc01092 Position (kb) 465 466 467Strain fitness (log2 ratio) -2 -1 0 1 2at 464.943 kb on + strand, within SMc01094at 464.943 kb on + strand, within SMc01094at 464.944 kb on - strand, within SMc01094at 465.066 kb on + strand, within SMc01094at 465.135 kb on + strand, within SMc01094at 465.671 kb on + strandat 465.678 kb on + strandat 465.678 kb on + strandat 465.735 kb on - strandat 465.855 kb on + strand, within SMc01093at 465.855 kb on + strand, within SMc01093at 465.855 kb on + strand, within SMc01093at 465.984 kb on + strand, within SMc01093at 465.984 kb on + strand, within SMc01093at 465.985 kb on - strand, within SMc01093at 466.240 kb on - strand, within SMc01093at 466.555 kb on - strandat 466.555 kb on - strandat 466.948 kb on + strand, within SMc01092at 466.984 kb on - strand, within SMc01092at 467.196 kb on + strand, within SMc01092at 467.196 kb on + strand, within SMc01092at 467.208 kb on + strand, within SMc01092at 467.209 kb on - strand, within SMc01092at 467.286 kb on + strand, within SMc01092at 467.288 kb on + strand, within SMc01092at 467.288 kb on + strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.289 kb on - strand, within SMc01092at 467.316 kb on + strand, within SMc01092at 467.316 kb on + strand, within SMc01092at 467.316 kb on + strand, within SMc01092at 467.317 kb on - strand, within SMc01092at 467.317 kb on - strand, within SMc01092at 467.442 kb on + strand, within SMc01092at 467.442 kb on + strand, within SMc01092at 467.442 kb on + strand, within SMc01092

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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464,943 + SMc01094 0.44 -0.4
464,943 + SMc01094 0.44 +0.7
464,944 - SMc01094 0.44 +1.7
465,066 + SMc01094 0.54 -0.3
465,135 + SMc01094 0.59 +0.1
465,671 + +0.7
465,678 + +0.7
465,678 + -0.2
465,735 - -1.4
465,855 + SMc01093 0.22 -0.6
465,855 + SMc01093 0.22 -0.8
465,855 + SMc01093 0.22 +1.0
465,984 + SMc01093 0.38 +2.0
465,984 + SMc01093 0.38 +1.0
465,985 - SMc01093 0.38 -1.2
466,240 - SMc01093 0.69 -0.2
466,555 - -0.6
466,555 - -1.0
466,948 + SMc01092 0.33 -0.5
466,984 - SMc01092 0.37 +0.4
467,196 + SMc01092 0.61 -0.1
467,196 + SMc01092 0.61 -0.4
467,208 + SMc01092 0.63 +0.0
467,209 - SMc01092 0.63 -1.0
467,286 + SMc01092 0.71 -0.2
467,288 + SMc01092 0.72 -2.4
467,288 + SMc01092 0.72 +0.2
467,289 - SMc01092 0.72 -0.4
467,289 - SMc01092 0.72 -1.0
467,289 - SMc01092 0.72 +1.0
467,289 - SMc01092 0.72 -0.6
467,289 - SMc01092 0.72 +2.0
467,316 + SMc01092 0.75 +0.0
467,316 + SMc01092 0.75 -0.3
467,316 + SMc01092 0.75 -0.5
467,317 - SMc01092 0.75 +0.0
467,317 - SMc01092 0.75 -0.8
467,442 + SMc01092 0.89 -0.0
467,442 + SMc01092 0.89 +0.3
467,442 + SMc01092 0.89 +0.2

Or see this region's nucleotide sequence