Strain Fitness in Sinorhizobium meliloti 1021 around SMa1678

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1677 and SMa1678 are separated by 280 nucleotidesSMa1678 and SMa1680 are separated by 263 nucleotides SMa1677: SMa1677 - Metallo-dependent hydrolase, at 941,157 to 942,590 SMa1677 SMa1678: SMa1678 - hypothetical protein, at 942,871 to 943,152 SMa1678 SMa1680: SMa1680 - hypothetical protein, at 943,416 to 945,809 SMa1680 Position (kb) 942 943 944Strain fitness (log2 ratio) -2 -1 0 1 2 3at 942.037 kb on + strand, within SMa1677at 942.037 kb on + strand, within SMa1677at 942.037 kb on + strand, within SMa1677at 942.037 kb on + strand, within SMa1677at 942.037 kb on + strand, within SMa1677at 942.038 kb on - strand, within SMa1677at 942.116 kb on + strand, within SMa1677at 942.325 kb on - strand, within SMa1677at 942.693 kb on + strandat 942.792 kb on + strandat 942.793 kb on - strandat 942.801 kb on + strandat 942.801 kb on + strandat 942.802 kb on - strandat 942.802 kb on - strandat 942.819 kb on + strandat 942.855 kb on + strandat 942.860 kb on + strandat 942.860 kb on + strandat 942.861 kb on - strandat 942.861 kb on - strandat 942.862 kb on + strandat 942.864 kb on + strandat 942.864 kb on + strandat 942.865 kb on - strandat 942.865 kb on - strandat 942.872 kb on + strandat 943.353 kb on + strandat 943.354 kb on - strandat 943.354 kb on - strandat 943.417 kb on + strandat 943.443 kb on + strandat 943.525 kb on + strandat 943.810 kb on + strand, within SMa1680at 943.953 kb on + strand, within SMa1680at 943.953 kb on + strand, within SMa1680at 943.963 kb on + strand, within SMa1680at 943.963 kb on + strand, within SMa1680at 944.005 kb on + strand, within SMa1680

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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942,037 + SMa1677 0.61 -0.2
942,037 + SMa1677 0.61 -1.5
942,037 + SMa1677 0.61 +1.3
942,037 + SMa1677 0.61 +0.3
942,037 + SMa1677 0.61 +0.8
942,038 - SMa1677 0.61 -0.6
942,116 + SMa1677 0.67 +0.7
942,325 - SMa1677 0.81 -1.6
942,693 + +0.2
942,792 + +2.2
942,793 - -1.1
942,801 + -0.1
942,801 + +0.7
942,802 - -0.0
942,802 - +0.1
942,819 + -1.1
942,855 + +1.1
942,860 + -1.2
942,860 + -1.6
942,861 - -1.8
942,861 - -0.1
942,862 + +0.9
942,864 + +1.4
942,864 + +0.5
942,865 - -0.1
942,865 - -0.5
942,872 + +0.5
943,353 + +0.2
943,354 - -0.1
943,354 - -1.1
943,417 + -0.3
943,443 + -1.4
943,525 + -0.8
943,810 + SMa1680 0.16 -0.2
943,953 + SMa1680 0.22 -1.0
943,953 + SMa1680 0.22 -1.1
943,963 + SMa1680 0.23 -0.4
943,963 + SMa1680 0.23 +3.1
944,005 + SMa1680 0.25 -0.2

Or see this region's nucleotide sequence