Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20969 and SM_b20970 overlap by 8 nucleotides SM_b20970 and SM_b20971 are separated by 12 nucleotides SM_b20971 and SM_b20972 overlap by 8 nucleotides
SM_b20969: SM_b20969 - sugar uptake ABC transporter permease, at 1,199,134 to 1,199,946
_b20969
SM_b20970: SM_b20970 - sugar uptake ABC transporter permease, at 1,199,939 to 1,200,898
_b20970
SM_b20971: SM_b20971 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,200,911 to 1,202,143
_b20971
SM_b20972: SM_b20972 - sugar uptake ABC transporter ATP-binding protein, at 1,202,136 to 1,203,311
_b20972
Position (kb) 1200
1201
1202
1203 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1199.940 kb on + strand at 1199.940 kb on + strand at 1199.940 kb on + strand at 1199.982 kb on + strand at 1199.983 kb on - strand at 1199.985 kb on + strand at 1199.985 kb on + strand at 1199.985 kb on + strand at 1199.985 kb on + strand at 1199.986 kb on - strand at 1199.986 kb on - strand at 1199.986 kb on - strand at 1200.102 kb on + strand, within SM_b20970 at 1200.103 kb on - strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.108 kb on + strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.109 kb on - strand, within SM_b20970 at 1200.123 kb on + strand, within SM_b20970 at 1200.123 kb on + strand, within SM_b20970 at 1200.124 kb on - strand, within SM_b20970 at 1200.124 kb on - strand, within SM_b20970 at 1200.165 kb on - strand, within SM_b20970 at 1200.165 kb on - strand, within SM_b20970 at 1200.343 kb on + strand, within SM_b20970 at 1200.472 kb on - strand, within SM_b20970 at 1200.616 kb on - strand, within SM_b20970 at 1200.616 kb on - strand, within SM_b20970 at 1200.687 kb on + strand, within SM_b20970 at 1200.687 kb on + strand, within SM_b20970 at 1200.688 kb on - strand, within SM_b20970 at 1200.688 kb on - strand, within SM_b20970 at 1200.709 kb on + strand, within SM_b20970 at 1200.794 kb on + strand, within SM_b20970 at 1201.045 kb on - strand, within SM_b20971 at 1201.095 kb on + strand, within SM_b20971 at 1201.095 kb on + strand, within SM_b20971 at 1201.096 kb on - strand, within SM_b20971 at 1201.096 kb on - strand, within SM_b20971 at 1201.311 kb on + strand, within SM_b20971 at 1201.311 kb on + strand, within SM_b20971 at 1201.312 kb on - strand, within SM_b20971 at 1201.312 kb on - strand, within SM_b20971 at 1201.333 kb on + strand, within SM_b20971 at 1201.489 kb on + strand, within SM_b20971 at 1201.490 kb on - strand, within SM_b20971 at 1201.497 kb on + strand, within SM_b20971 at 1201.498 kb on - strand, within SM_b20971 at 1201.498 kb on - strand, within SM_b20971 at 1201.530 kb on + strand, within SM_b20971 at 1201.530 kb on + strand, within SM_b20971 at 1201.530 kb on + strand, within SM_b20971 at 1201.530 kb on + strand, within SM_b20971 at 1201.531 kb on - strand, within SM_b20971 at 1201.531 kb on - strand, within SM_b20971 at 1201.531 kb on - strand, within SM_b20971 at 1201.531 kb on - strand, within SM_b20971 at 1201.602 kb on + strand, within SM_b20971 at 1201.714 kb on - strand, within SM_b20971 at 1201.714 kb on - strand, within SM_b20971 at 1201.863 kb on + strand, within SM_b20971 at 1201.863 kb on + strand, within SM_b20971 at 1201.864 kb on - strand, within SM_b20971 at 1201.867 kb on - strand, within SM_b20971 at 1201.885 kb on + strand, within SM_b20971 at 1201.885 kb on + strand, within SM_b20971 at 1201.885 kb on + strand, within SM_b20971 at 1201.885 kb on + strand, within SM_b20971 at 1201.886 kb on - strand, within SM_b20971 at 1201.886 kb on - strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.887 kb on + strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1201.888 kb on - strand, within SM_b20971 at 1202.135 kb on - strand at 1202.196 kb on - strand at 1202.360 kb on + strand, within SM_b20972 at 1202.361 kb on - strand, within SM_b20972 at 1202.361 kb on - strand, within SM_b20972 at 1202.507 kb on + strand, within SM_b20972 at 1202.530 kb on - strand, within SM_b20972 at 1202.644 kb on + strand, within SM_b20972 at 1202.644 kb on + strand, within SM_b20972 at 1202.644 kb on + strand, within SM_b20972 at 1202.645 kb on - strand, within SM_b20972 at 1202.645 kb on - strand, within SM_b20972 at 1202.645 kb on - strand, within SM_b20972 at 1202.720 kb on + strand, within SM_b20972 at 1202.720 kb on + strand, within SM_b20972 at 1202.721 kb on - strand, within SM_b20972 at 1202.721 kb on - strand, within SM_b20972 at 1202.746 kb on + strand, within SM_b20972 at 1202.747 kb on - strand, within SM_b20972 at 1202.747 kb on - strand, within SM_b20972 at 1202.747 kb on - strand, within SM_b20972 at 1202.841 kb on + strand, within SM_b20972 at 1202.841 kb on + strand, within SM_b20972 at 1202.999 kb on + strand, within SM_b20972 at 1203.000 kb on - strand, within SM_b20972 at 1203.045 kb on - strand, within SM_b20972 at 1203.061 kb on + strand, within SM_b20972
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 1,199,940 + +0.0 1,199,940 + +0.1 1,199,940 + +0.2 1,199,982 + -0.4 1,199,983 - +0.6 1,199,985 + -0.1 1,199,985 + -0.5 1,199,985 + -0.2 1,199,985 + +0.4 1,199,986 - -0.8 1,199,986 - +0.9 1,199,986 - +0.4 1,200,102 + SM_b20970 0.17 -0.6 1,200,103 - SM_b20970 0.17 -0.0 1,200,108 + SM_b20970 0.18 -0.4 1,200,108 + SM_b20970 0.18 +0.4 1,200,108 + SM_b20970 0.18 -0.1 1,200,108 + SM_b20970 0.18 +3.1 1,200,108 + SM_b20970 0.18 -0.2 1,200,108 + SM_b20970 0.18 +0.4 1,200,108 + SM_b20970 0.18 +0.2 1,200,109 - SM_b20970 0.18 -0.3 1,200,109 - SM_b20970 0.18 +0.7 1,200,109 - SM_b20970 0.18 +0.5 1,200,109 - SM_b20970 0.18 -0.3 1,200,109 - SM_b20970 0.18 +0.4 1,200,123 + SM_b20970 0.19 +1.5 1,200,123 + SM_b20970 0.19 +0.3 1,200,124 - SM_b20970 0.19 +0.6 1,200,124 - SM_b20970 0.19 +1.4 1,200,165 - SM_b20970 0.24 -0.4 1,200,165 - SM_b20970 0.24 +0.5 1,200,343 + SM_b20970 0.42 +0.5 1,200,472 - SM_b20970 0.56 +0.1 1,200,616 - SM_b20970 0.71 -0.0 1,200,616 - SM_b20970 0.71 -0.1 1,200,687 + SM_b20970 0.78 +1.1 1,200,687 + SM_b20970 0.78 -0.4 1,200,688 - SM_b20970 0.78 +0.0 1,200,688 - SM_b20970 0.78 +1.1 1,200,709 + SM_b20970 0.80 -1.2 1,200,794 + SM_b20970 0.89 +0.5 1,201,045 - SM_b20971 0.11 +1.4 1,201,095 + SM_b20971 0.15 +0.2 1,201,095 + SM_b20971 0.15 -0.4 1,201,096 - SM_b20971 0.15 +1.9 1,201,096 - SM_b20971 0.15 +0.2 1,201,311 + SM_b20971 0.32 +0.4 1,201,311 + SM_b20971 0.32 -0.4 1,201,312 - SM_b20971 0.33 -0.0 1,201,312 - SM_b20971 0.33 -0.1 1,201,333 + SM_b20971 0.34 -0.2 1,201,489 + SM_b20971 0.47 +0.8 1,201,490 - SM_b20971 0.47 +0.5 1,201,497 + SM_b20971 0.48 +0.1 1,201,498 - SM_b20971 0.48 -1.8 1,201,498 - SM_b20971 0.48 -0.8 1,201,530 + SM_b20971 0.50 -0.4 1,201,530 + SM_b20971 0.50 -0.0 1,201,530 + SM_b20971 0.50 +0.1 1,201,530 + SM_b20971 0.50 -1.4 1,201,531 - SM_b20971 0.50 -0.2 1,201,531 - SM_b20971 0.50 -0.2 1,201,531 - SM_b20971 0.50 +1.3 1,201,531 - SM_b20971 0.50 -0.5 1,201,602 + SM_b20971 0.56 -0.5 1,201,714 - SM_b20971 0.65 +0.5 1,201,714 - SM_b20971 0.65 -1.3 1,201,863 + SM_b20971 0.77 -1.4 1,201,863 + SM_b20971 0.77 +0.1 1,201,864 - SM_b20971 0.77 -0.2 1,201,867 - SM_b20971 0.78 -2.0 1,201,885 + SM_b20971 0.79 -0.0 1,201,885 + SM_b20971 0.79 -0.1 1,201,885 + SM_b20971 0.79 -0.7 1,201,885 + SM_b20971 0.79 +1.4 1,201,886 - SM_b20971 0.79 -0.2 1,201,886 - SM_b20971 0.79 -0.6 1,201,887 + SM_b20971 0.79 -0.3 1,201,887 + SM_b20971 0.79 +0.3 1,201,887 + SM_b20971 0.79 -0.2 1,201,887 + SM_b20971 0.79 -0.1 1,201,887 + SM_b20971 0.79 -0.4 1,201,887 + SM_b20971 0.79 -1.1 1,201,887 + SM_b20971 0.79 -0.1 1,201,887 + SM_b20971 0.79 -0.4 1,201,887 + SM_b20971 0.79 +1.2 1,201,888 - SM_b20971 0.79 +0.2 1,201,888 - SM_b20971 0.79 +1.0 1,201,888 - SM_b20971 0.79 -0.7 1,201,888 - SM_b20971 0.79 +0.6 1,201,888 - SM_b20971 0.79 -2.0 1,201,888 - SM_b20971 0.79 +0.5 1,201,888 - SM_b20971 0.79 -0.0 1,201,888 - SM_b20971 0.79 -0.6 1,201,888 - SM_b20971 0.79 +0.3 1,201,888 - SM_b20971 0.79 -0.6 1,202,135 - +0.1 1,202,196 - +1.6 1,202,360 + SM_b20972 0.19 +0.9 1,202,361 - SM_b20972 0.19 -0.9 1,202,361 - SM_b20972 0.19 +0.5 1,202,507 + SM_b20972 0.32 -0.9 1,202,530 - SM_b20972 0.34 -0.3 1,202,644 + SM_b20972 0.43 +0.0 1,202,644 + SM_b20972 0.43 +0.6 1,202,644 + SM_b20972 0.43 -0.7 1,202,645 - SM_b20972 0.43 +0.7 1,202,645 - SM_b20972 0.43 +0.6 1,202,645 - SM_b20972 0.43 +0.1 1,202,720 + SM_b20972 0.50 +0.5 1,202,720 + SM_b20972 0.50 -0.4 1,202,721 - SM_b20972 0.50 +0.1 1,202,721 - SM_b20972 0.50 +0.8 1,202,746 + SM_b20972 0.52 -1.4 1,202,747 - SM_b20972 0.52 +0.1 1,202,747 - SM_b20972 0.52 +0.3 1,202,747 - SM_b20972 0.52 +1.1 1,202,841 + SM_b20972 0.60 +0.6 1,202,841 + SM_b20972 0.60 -1.9 1,202,999 + SM_b20972 0.73 -1.7 1,203,000 - SM_b20972 0.73 +2.2 1,203,045 - SM_b20972 0.77 -0.0 1,203,061 + SM_b20972 0.79 +0.5
Or see this region's nucleotide sequence