Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20849 and SM_b20850 are separated by 114 nucleotides SM_b20850 and SM_b20851 are separated by 247 nucleotides
SM_b20849: SM_b20849 - guanine deaminase, at 1,251,749 to 1,253,065
_b20849
SM_b20850: SM_b20850 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data) , at 1,253,180 to 1,254,316
_b20850
SM_b20851: SM_b20851 - SorC family transcriptional regulator, at 1,254,564 to 1,255,544
_b20851
Position (kb)
1253
1254
1255 Strain fitness (log2 ratio)
-2
-1
0
1 at 1252.286 kb on + strand, within SM_b20849 at 1252.286 kb on + strand, within SM_b20849 at 1252.287 kb on - strand, within SM_b20849 at 1252.346 kb on - strand, within SM_b20849 at 1252.504 kb on + strand, within SM_b20849 at 1252.505 kb on - strand, within SM_b20849 at 1252.514 kb on + strand, within SM_b20849 at 1252.736 kb on + strand, within SM_b20849 at 1252.737 kb on - strand, within SM_b20849 at 1252.767 kb on - strand, within SM_b20849 at 1252.817 kb on + strand, within SM_b20849 at 1252.817 kb on + strand, within SM_b20849 at 1252.848 kb on + strand, within SM_b20849 at 1253.118 kb on - strand at 1253.120 kb on + strand at 1253.121 kb on - strand at 1253.142 kb on + strand at 1253.199 kb on + strand at 1253.200 kb on - strand at 1253.253 kb on - strand at 1253.285 kb on + strand at 1253.286 kb on - strand at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.567 kb on + strand, within SM_b20850 at 1253.568 kb on - strand, within SM_b20850 at 1253.568 kb on - strand, within SM_b20850 at 1253.568 kb on - strand, within SM_b20850 at 1253.678 kb on - strand, within SM_b20850 at 1254.130 kb on + strand, within SM_b20850 at 1254.131 kb on - strand, within SM_b20850 at 1254.131 kb on - strand, within SM_b20850 at 1254.161 kb on + strand, within SM_b20850 at 1254.161 kb on + strand, within SM_b20850 at 1254.162 kb on - strand, within SM_b20850 at 1254.162 kb on - strand, within SM_b20850 at 1254.162 kb on - strand, within SM_b20850 at 1254.314 kb on + strand at 1254.359 kb on - strand at 1254.359 kb on - strand at 1254.405 kb on + strand at 1254.405 kb on + strand at 1254.420 kb on + strand at 1254.420 kb on + strand at 1254.420 kb on + strand at 1254.421 kb on - strand at 1254.421 kb on - strand at 1255.049 kb on + strand, within SM_b20851 at 1255.049 kb on + strand, within SM_b20851 at 1255.049 kb on + strand, within SM_b20851 at 1255.049 kb on + strand, within SM_b20851 at 1255.050 kb on - strand at 1255.050 kb on - strand, within SM_b20851 at 1255.054 kb on + strand, within SM_b20851 at 1255.055 kb on - strand, within SM_b20851 at 1255.096 kb on - strand, within SM_b20851 at 1255.154 kb on + strand, within SM_b20851 at 1255.154 kb on + strand, within SM_b20851 at 1255.155 kb on - strand, within SM_b20851 at 1255.207 kb on + strand, within SM_b20851 at 1255.207 kb on + strand, within SM_b20851 at 1255.208 kb on - strand, within SM_b20851 at 1255.208 kb on - strand, within SM_b20851
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 1,252,286 + SM_b20849 0.41 -0.0 1,252,286 + SM_b20849 0.41 +0.3 1,252,287 - SM_b20849 0.41 +0.1 1,252,346 - SM_b20849 0.45 -1.0 1,252,504 + SM_b20849 0.57 -0.4 1,252,505 - SM_b20849 0.57 -0.0 1,252,514 + SM_b20849 0.58 +1.1 1,252,736 + SM_b20849 0.75 +1.6 1,252,737 - SM_b20849 0.75 +1.3 1,252,767 - SM_b20849 0.77 -0.2 1,252,817 + SM_b20849 0.81 +0.8 1,252,817 + SM_b20849 0.81 +0.5 1,252,848 + SM_b20849 0.83 +1.3 1,253,118 - +0.6 1,253,120 + +0.0 1,253,121 - -0.2 1,253,142 + +0.5 1,253,199 + -1.1 1,253,200 - -0.5 1,253,253 - -0.8 1,253,285 + +0.2 1,253,286 - -0.7 1,253,567 + SM_b20850 0.34 -0.9 1,253,567 + SM_b20850 0.34 +0.2 1,253,567 + SM_b20850 0.34 +1.4 1,253,567 + SM_b20850 0.34 -0.7 1,253,567 + SM_b20850 0.34 +0.4 1,253,567 + SM_b20850 0.34 -0.7 1,253,568 - SM_b20850 0.34 +0.6 1,253,568 - SM_b20850 0.34 +0.1 1,253,568 - SM_b20850 0.34 +0.3 1,253,678 - SM_b20850 0.44 +0.4 1,254,130 + SM_b20850 0.84 +0.3 1,254,131 - SM_b20850 0.84 +0.9 1,254,131 - SM_b20850 0.84 -1.2 1,254,161 + SM_b20850 0.86 +0.8 1,254,161 + SM_b20850 0.86 -0.1 1,254,162 - SM_b20850 0.86 +0.3 1,254,162 - SM_b20850 0.86 +0.4 1,254,162 - SM_b20850 0.86 +0.6 1,254,314 + -1.5 1,254,359 - -0.1 1,254,359 - +0.8 1,254,405 + +1.1 1,254,405 + +0.1 1,254,420 + +1.2 1,254,420 + +0.4 1,254,420 + -0.5 1,254,421 - +0.4 1,254,421 - -0.6 1,255,049 + SM_b20851 0.49 +0.3 1,255,049 + SM_b20851 0.49 -0.0 1,255,049 + SM_b20851 0.49 -0.4 1,255,049 + SM_b20851 0.49 -0.2 1,255,050 - +0.3 1,255,050 - SM_b20851 0.50 -0.2 1,255,054 + SM_b20851 0.50 -0.1 1,255,055 - SM_b20851 0.50 +0.3 1,255,096 - SM_b20851 0.54 -0.2 1,255,154 + SM_b20851 0.60 -1.2 1,255,154 + SM_b20851 0.60 +0.5 1,255,155 - SM_b20851 0.60 -1.6 1,255,207 + SM_b20851 0.66 -0.3 1,255,207 + SM_b20851 0.66 -1.6 1,255,208 - SM_b20851 0.66 -1.9 1,255,208 - SM_b20851 0.66 -2.0
Or see this region's nucleotide sequence