Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20582

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20581 and SM_b20582 are separated by 144 nucleotidesSM_b20582 and SM_b20583 are separated by 91 nucleotides SM_b20581: SM_b20581 - 4-hydroxyphenylpyruvate dioxygenase, at 1,594,321 to 1,596,210 _b20581 SM_b20582: SM_b20582 - LysR family transcriptional regulator, at 1,596,355 to 1,597,275 _b20582 SM_b20583: SM_b20583 - 4-hydroxybenzoate 3-monooxygenase, at 1,597,367 to 1,598,539 _b20583 Position (kb) 1596 1597 1598Strain fitness (log2 ratio) -1 0 1at 1595.423 kb on + strand, within SM_b20581at 1595.424 kb on - strand, within SM_b20581at 1595.424 kb on - strand, within SM_b20581at 1595.516 kb on + strandat 1595.601 kb on - strand, within SM_b20581at 1595.692 kb on - strand, within SM_b20581at 1595.813 kb on + strand, within SM_b20581at 1595.813 kb on + strand, within SM_b20581at 1596.250 kb on + strandat 1596.434 kb on + strandat 1596.435 kb on - strandat 1596.435 kb on - strandat 1596.471 kb on - strand, within SM_b20582at 1596.471 kb on - strand, within SM_b20582at 1596.471 kb on - strand, within SM_b20582at 1596.661 kb on + strand, within SM_b20582at 1596.661 kb on + strand, within SM_b20582at 1596.827 kb on + strand, within SM_b20582at 1596.827 kb on + strand, within SM_b20582at 1596.828 kb on - strand, within SM_b20582at 1596.828 kb on - strand, within SM_b20582at 1596.866 kb on + strand, within SM_b20582at 1596.867 kb on - strand, within SM_b20582at 1597.106 kb on + strand, within SM_b20582at 1597.107 kb on - strand, within SM_b20582at 1597.164 kb on + strand, within SM_b20582at 1597.165 kb on - strand, within SM_b20582at 1597.165 kb on - strand, within SM_b20582at 1597.165 kb on - strand, within SM_b20582at 1597.266 kb on + strandat 1597.267 kb on - strandat 1597.387 kb on - strandat 1597.431 kb on + strandat 1597.432 kb on - strandat 1597.432 kb on - strandat 1597.432 kb on - strandat 1597.432 kb on - strandat 1597.590 kb on + strand, within SM_b20583at 1597.617 kb on + strand, within SM_b20583at 1597.618 kb on - strand, within SM_b20583at 1597.618 kb on - strand, within SM_b20583at 1597.672 kb on + strand, within SM_b20583at 1597.875 kb on + strand, within SM_b20583at 1597.875 kb on + strand, within SM_b20583at 1597.875 kb on + strand, within SM_b20583at 1597.876 kb on - strand, within SM_b20583at 1597.876 kb on - strand, within SM_b20583at 1597.878 kb on + strand, within SM_b20583at 1597.879 kb on - strand, within SM_b20583at 1597.938 kb on + strand, within SM_b20583at 1597.939 kb on - strand, within SM_b20583at 1597.939 kb on - strand, within SM_b20583at 1597.939 kb on - strand, within SM_b20583at 1598.241 kb on + strand, within SM_b20583at 1598.241 kb on + strand, within SM_b20583at 1598.241 kb on + strand, within SM_b20583at 1598.242 kb on - strand, within SM_b20583

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,595,423 + SM_b20581 0.58 -0.8
1,595,424 - SM_b20581 0.58 +1.6
1,595,424 - SM_b20581 0.58 -0.1
1,595,516 + -0.1
1,595,601 - SM_b20581 0.68 +1.7
1,595,692 - SM_b20581 0.73 +0.1
1,595,813 + SM_b20581 0.79 -0.3
1,595,813 + SM_b20581 0.79 +0.2
1,596,250 + -0.4
1,596,434 + +0.9
1,596,435 - -0.1
1,596,435 - -0.1
1,596,471 - SM_b20582 0.13 +1.3
1,596,471 - SM_b20582 0.13 +0.4
1,596,471 - SM_b20582 0.13 +0.1
1,596,661 + SM_b20582 0.33 +0.6
1,596,661 + SM_b20582 0.33 -0.1
1,596,827 + SM_b20582 0.51 +0.5
1,596,827 + SM_b20582 0.51 -0.1
1,596,828 - SM_b20582 0.51 -1.3
1,596,828 - SM_b20582 0.51 -0.5
1,596,866 + SM_b20582 0.55 -1.5
1,596,867 - SM_b20582 0.56 -0.0
1,597,106 + SM_b20582 0.82 -0.1
1,597,107 - SM_b20582 0.82 -0.3
1,597,164 + SM_b20582 0.88 -0.4
1,597,165 - SM_b20582 0.88 -0.9
1,597,165 - SM_b20582 0.88 +0.4
1,597,165 - SM_b20582 0.88 +0.9
1,597,266 + +0.2
1,597,267 - -0.4
1,597,387 - -1.1
1,597,431 + -0.8
1,597,432 - -1.0
1,597,432 - -0.0
1,597,432 - +0.2
1,597,432 - +0.6
1,597,590 + SM_b20583 0.19 +0.9
1,597,617 + SM_b20583 0.21 -0.1
1,597,618 - SM_b20583 0.21 -0.5
1,597,618 - SM_b20583 0.21 -0.3
1,597,672 + SM_b20583 0.26 -0.7
1,597,875 + SM_b20583 0.43 +0.1
1,597,875 + SM_b20583 0.43 +0.2
1,597,875 + SM_b20583 0.43 -0.2
1,597,876 - SM_b20583 0.43 -0.2
1,597,876 - SM_b20583 0.43 +0.1
1,597,878 + SM_b20583 0.44 +0.6
1,597,879 - SM_b20583 0.44 -0.7
1,597,938 + SM_b20583 0.49 -0.2
1,597,939 - SM_b20583 0.49 +1.6
1,597,939 - SM_b20583 0.49 +0.5
1,597,939 - SM_b20583 0.49 +0.9
1,598,241 + SM_b20583 0.75 -0.5
1,598,241 + SM_b20583 0.75 +0.9
1,598,241 + SM_b20583 0.75 +0.4
1,598,242 - SM_b20583 0.75 +1.2

Or see this region's nucleotide sequence