Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20581 and SM_b20582 are separated by 144 nucleotides SM_b20582 and SM_b20583 are separated by 91 nucleotides
SM_b20581: SM_b20581 - 4-hydroxyphenylpyruvate dioxygenase, at 1,594,321 to 1,596,210
_b20581
SM_b20582: SM_b20582 - LysR family transcriptional regulator, at 1,596,355 to 1,597,275
_b20582
SM_b20583: SM_b20583 - 4-hydroxybenzoate 3-monooxygenase, at 1,597,367 to 1,598,539
_b20583
Position (kb)
1596
1597
1598 Strain fitness (log2 ratio)
-1
0
1 at 1595.423 kb on + strand, within SM_b20581 at 1595.424 kb on - strand, within SM_b20581 at 1595.424 kb on - strand, within SM_b20581 at 1595.516 kb on + strand at 1595.601 kb on - strand, within SM_b20581 at 1595.692 kb on - strand, within SM_b20581 at 1595.813 kb on + strand, within SM_b20581 at 1595.813 kb on + strand, within SM_b20581 at 1596.250 kb on + strand at 1596.434 kb on + strand at 1596.435 kb on - strand at 1596.435 kb on - strand at 1596.471 kb on - strand, within SM_b20582 at 1596.471 kb on - strand, within SM_b20582 at 1596.471 kb on - strand, within SM_b20582 at 1596.661 kb on + strand, within SM_b20582 at 1596.661 kb on + strand, within SM_b20582 at 1596.827 kb on + strand, within SM_b20582 at 1596.827 kb on + strand, within SM_b20582 at 1596.828 kb on - strand, within SM_b20582 at 1596.828 kb on - strand, within SM_b20582 at 1596.866 kb on + strand, within SM_b20582 at 1596.867 kb on - strand, within SM_b20582 at 1597.106 kb on + strand, within SM_b20582 at 1597.107 kb on - strand, within SM_b20582 at 1597.164 kb on + strand, within SM_b20582 at 1597.165 kb on - strand, within SM_b20582 at 1597.165 kb on - strand, within SM_b20582 at 1597.165 kb on - strand, within SM_b20582 at 1597.266 kb on + strand at 1597.267 kb on - strand at 1597.387 kb on - strand at 1597.431 kb on + strand at 1597.432 kb on - strand at 1597.432 kb on - strand at 1597.432 kb on - strand at 1597.432 kb on - strand at 1597.590 kb on + strand, within SM_b20583 at 1597.617 kb on + strand, within SM_b20583 at 1597.618 kb on - strand, within SM_b20583 at 1597.618 kb on - strand, within SM_b20583 at 1597.672 kb on + strand, within SM_b20583 at 1597.875 kb on + strand, within SM_b20583 at 1597.875 kb on + strand, within SM_b20583 at 1597.875 kb on + strand, within SM_b20583 at 1597.876 kb on - strand, within SM_b20583 at 1597.876 kb on - strand, within SM_b20583 at 1597.878 kb on + strand, within SM_b20583 at 1597.879 kb on - strand, within SM_b20583 at 1597.938 kb on + strand, within SM_b20583 at 1597.939 kb on - strand, within SM_b20583 at 1597.939 kb on - strand, within SM_b20583 at 1597.939 kb on - strand, within SM_b20583 at 1598.241 kb on + strand, within SM_b20583 at 1598.241 kb on + strand, within SM_b20583 at 1598.241 kb on + strand, within SM_b20583 at 1598.242 kb on - strand, within SM_b20583
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 1,595,423 + SM_b20581 0.58 -0.8 1,595,424 - SM_b20581 0.58 +1.6 1,595,424 - SM_b20581 0.58 -0.1 1,595,516 + -0.1 1,595,601 - SM_b20581 0.68 +1.7 1,595,692 - SM_b20581 0.73 +0.1 1,595,813 + SM_b20581 0.79 -0.3 1,595,813 + SM_b20581 0.79 +0.2 1,596,250 + -0.4 1,596,434 + +0.9 1,596,435 - -0.1 1,596,435 - -0.1 1,596,471 - SM_b20582 0.13 +1.3 1,596,471 - SM_b20582 0.13 +0.4 1,596,471 - SM_b20582 0.13 +0.1 1,596,661 + SM_b20582 0.33 +0.6 1,596,661 + SM_b20582 0.33 -0.1 1,596,827 + SM_b20582 0.51 +0.5 1,596,827 + SM_b20582 0.51 -0.1 1,596,828 - SM_b20582 0.51 -1.3 1,596,828 - SM_b20582 0.51 -0.5 1,596,866 + SM_b20582 0.55 -1.5 1,596,867 - SM_b20582 0.56 -0.0 1,597,106 + SM_b20582 0.82 -0.1 1,597,107 - SM_b20582 0.82 -0.3 1,597,164 + SM_b20582 0.88 -0.4 1,597,165 - SM_b20582 0.88 -0.9 1,597,165 - SM_b20582 0.88 +0.4 1,597,165 - SM_b20582 0.88 +0.9 1,597,266 + +0.2 1,597,267 - -0.4 1,597,387 - -1.1 1,597,431 + -0.8 1,597,432 - -1.0 1,597,432 - -0.0 1,597,432 - +0.2 1,597,432 - +0.6 1,597,590 + SM_b20583 0.19 +0.9 1,597,617 + SM_b20583 0.21 -0.1 1,597,618 - SM_b20583 0.21 -0.5 1,597,618 - SM_b20583 0.21 -0.3 1,597,672 + SM_b20583 0.26 -0.7 1,597,875 + SM_b20583 0.43 +0.1 1,597,875 + SM_b20583 0.43 +0.2 1,597,875 + SM_b20583 0.43 -0.2 1,597,876 - SM_b20583 0.43 -0.2 1,597,876 - SM_b20583 0.43 +0.1 1,597,878 + SM_b20583 0.44 +0.6 1,597,879 - SM_b20583 0.44 -0.7 1,597,938 + SM_b20583 0.49 -0.2 1,597,939 - SM_b20583 0.49 +1.6 1,597,939 - SM_b20583 0.49 +0.5 1,597,939 - SM_b20583 0.49 +0.9 1,598,241 + SM_b20583 0.75 -0.5 1,598,241 + SM_b20583 0.75 +0.9 1,598,241 + SM_b20583 0.75 +0.4 1,598,242 - SM_b20583 0.75 +1.2
Or see this region's nucleotide sequence