Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20206 and SM_b20207 overlap by 4 nucleotides SM_b20207 and SM_b20208 overlap by 4 nucleotides SM_b20208 and SM_b20209 are separated by 68 nucleotides SM_b20209 and SM_b20210 are separated by 54 nucleotides
SM_b20206: SM_b20206 - pyrroloquinoline quinone biosynthesis protein PqqC, at 214,737 to 215,507
_b20206
SM_b20207: SM_b20207 - pyrroloquinoline quinone synthesis protein D, at 215,504 to 215,800
_b20207
SM_b20208: SM_b20208 - pyrroloquinoline quinone biosynthesis protein PqqE, at 215,797 to 216,924
_b20208
SM_b20209: SM_b20209 - hypothetical protein, at 216,993 to 217,232
_b20209
SM_b20210: SM_b20210 - oxidoreductase, at 217,287 to 218,000
_b20210
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1
2 at 214.800 kb on + strand at 214.888 kb on - strand, within SM_b20206 at 214.888 kb on - strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.890 kb on + strand, within SM_b20206 at 214.891 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.062 kb on - strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.083 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.115 kb on + strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.116 kb on - strand, within SM_b20206 at 215.227 kb on - strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.310 kb on + strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.311 kb on - strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.418 kb on + strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206 at 215.419 kb on - strand, within SM_b20206 at 215.808 kb on + strand at 215.809 kb on - strand at 215.809 kb on - strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.908 kb on + strand at 215.909 kb on - strand at 215.952 kb on - strand, within SM_b20208 at 216.088 kb on + strand, within SM_b20208 at 216.232 kb on + strand, within SM_b20208 at 216.276 kb on + strand, within SM_b20208 at 216.425 kb on + strand, within SM_b20208 at 216.425 kb on + strand, within SM_b20208 at 216.426 kb on - strand, within SM_b20208 at 216.498 kb on - strand, within SM_b20208 at 216.512 kb on - strand, within SM_b20208 at 216.538 kb on + strand, within SM_b20208 at 217.061 kb on + strand, within SM_b20209 at 217.090 kb on + strand, within SM_b20209 at 217.090 kb on + strand, within SM_b20209 at 217.215 kb on + strand at 217.215 kb on + strand at 217.216 kb on - strand at 217.227 kb on - strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.279 kb on + strand at 217.465 kb on - strand, within SM_b20210 at 217.623 kb on - strand, within SM_b20210 at 217.860 kb on + strand, within SM_b20210
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 214,800 + +0.1 214,888 - SM_b20206 0.20 -0.2 214,888 - SM_b20206 0.20 -0.2 214,890 + SM_b20206 0.20 -0.5 214,890 + SM_b20206 0.20 -0.1 214,890 + SM_b20206 0.20 -2.5 214,891 - SM_b20206 0.20 -0.4 215,062 - SM_b20206 0.42 +0.3 215,062 - SM_b20206 0.42 -1.0 215,083 + SM_b20206 0.45 -0.2 215,083 + SM_b20206 0.45 +1.2 215,115 + SM_b20206 0.49 +0.5 215,115 + SM_b20206 0.49 -0.3 215,116 - SM_b20206 0.49 +0.3 215,116 - SM_b20206 0.49 -0.5 215,227 - SM_b20206 0.64 +0.9 215,310 + SM_b20206 0.74 -0.1 215,310 + SM_b20206 0.74 +0.9 215,311 - SM_b20206 0.74 -0.1 215,311 - SM_b20206 0.74 +1.8 215,311 - SM_b20206 0.74 -0.8 215,418 + SM_b20206 0.88 +0.1 215,418 + SM_b20206 0.88 +1.0 215,419 - SM_b20206 0.88 -0.8 215,419 - SM_b20206 0.88 +1.3 215,808 + -0.3 215,809 - +0.3 215,809 - +0.1 215,908 + +0.2 215,908 + +1.1 215,908 + -2.2 215,909 - -0.1 215,952 - SM_b20208 0.14 +0.5 216,088 + SM_b20208 0.26 -0.1 216,232 + SM_b20208 0.39 +1.2 216,276 + SM_b20208 0.42 +0.1 216,425 + SM_b20208 0.56 +1.0 216,425 + SM_b20208 0.56 -1.2 216,426 - SM_b20208 0.56 -0.6 216,498 - SM_b20208 0.62 -0.1 216,512 - SM_b20208 0.63 +2.2 216,538 + SM_b20208 0.66 +1.5 217,061 + SM_b20209 0.28 +0.3 217,090 + SM_b20209 0.40 -0.2 217,090 + SM_b20209 0.40 +0.2 217,215 + +0.2 217,215 + +0.4 217,216 - -0.4 217,227 - -0.4 217,279 + -0.0 217,279 + +0.3 217,279 + -1.5 217,465 - SM_b20210 0.25 +0.8 217,623 - SM_b20210 0.47 +0.0 217,860 + SM_b20210 0.80 +1.2
Or see this region's nucleotide sequence