Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20199 and SM_b20200 are separated by 2 nucleotides SM_b20200 and SM_b20201 are separated by 10 nucleotides SM_b20201 and SM_b20202 are separated by 10 nucleotides
SM_b20199: SM_b20199 - fructose-1,6-bisphosphate aldolase, at 207,260 to 208,339
_b20199
SM_b20200: SM_b20200 - transketolase, at 208,342 to 210,426
_b20200
SM_b20201: SM_b20201 - phosphoribulokinase, at 210,437 to 211,306
_b20201
SM_b20202: SM_b20202 - fructose-1,6-bisphosphatase, at 211,317 to 212,366
_b20202
Position (kb) 208
209
210
211 Strain fitness (log2 ratio) -2
-1
0
1
2 at 207.548 kb on + strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.549 kb on - strand, within SM_b20199 at 207.731 kb on - strand, within SM_b20199 at 207.739 kb on - strand, within SM_b20199 at 207.957 kb on - strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.979 kb on + strand, within SM_b20199 at 207.981 kb on + strand, within SM_b20199 at 207.982 kb on - strand, within SM_b20199 at 208.122 kb on + strand, within SM_b20199 at 208.287 kb on + strand at 208.400 kb on - strand at 208.621 kb on - strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.793 kb on + strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.794 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 208.811 kb on - strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.045 kb on + strand, within SM_b20200 at 209.096 kb on + strand, within SM_b20200 at 209.097 kb on - strand, within SM_b20200 at 209.195 kb on + strand, within SM_b20200 at 209.204 kb on + strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200 at 209.205 kb on - strand, within SM_b20200 at 209.952 kb on - strand, within SM_b20200 at 210.083 kb on + strand, within SM_b20200 at 210.148 kb on - strand, within SM_b20200 at 210.179 kb on + strand, within SM_b20200 at 210.552 kb on + strand, within SM_b20201 at 210.552 kb on + strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.553 kb on - strand, within SM_b20201 at 210.658 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.730 kb on + strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.731 kb on - strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.732 kb on + strand, within SM_b20201 at 210.733 kb on - strand, within SM_b20201 at 210.839 kb on + strand, within SM_b20201 at 211.017 kb on + strand, within SM_b20201 at 211.018 kb on - strand, within SM_b20201 at 211.223 kb on + strand at 211.307 kb on - strand at 211.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 207,548 + SM_b20199 0.27 -0.1 207,549 - SM_b20199 0.27 -0.4 207,549 - SM_b20199 0.27 -0.4 207,549 - SM_b20199 0.27 +0.1 207,731 - SM_b20199 0.44 +0.2 207,739 - SM_b20199 0.44 +0.7 207,957 - SM_b20199 0.65 -0.3 207,979 + SM_b20199 0.67 -0.2 207,979 + SM_b20199 0.67 +0.8 207,981 + SM_b20199 0.67 -0.3 207,982 - SM_b20199 0.67 +0.1 208,122 + SM_b20199 0.80 -0.5 208,287 + -0.5 208,400 - +0.7 208,621 - SM_b20200 0.13 -0.4 208,793 + SM_b20200 0.22 -1.0 208,793 + SM_b20200 0.22 +0.0 208,793 + SM_b20200 0.22 -0.3 208,794 - SM_b20200 0.22 -0.1 208,794 - SM_b20200 0.22 -0.1 208,794 - SM_b20200 0.22 -1.2 208,811 - SM_b20200 0.22 -0.7 208,811 - SM_b20200 0.22 -0.2 208,811 - SM_b20200 0.22 -0.1 208,811 - SM_b20200 0.22 +0.3 209,045 + SM_b20200 0.34 -1.8 209,045 + SM_b20200 0.34 +2.2 209,096 + SM_b20200 0.36 -0.1 209,097 - SM_b20200 0.36 -0.5 209,195 + SM_b20200 0.41 +0.1 209,204 + SM_b20200 0.41 -0.1 209,205 - SM_b20200 0.41 -1.1 209,205 - SM_b20200 0.41 +0.7 209,952 - SM_b20200 0.77 -1.6 210,083 + SM_b20200 0.84 -1.1 210,148 - SM_b20200 0.87 +0.1 210,179 + SM_b20200 0.88 +0.6 210,552 + SM_b20201 0.13 -0.2 210,552 + SM_b20201 0.13 -0.1 210,553 - SM_b20201 0.13 +2.2 210,553 - +0.9 210,553 - SM_b20201 0.13 +0.5 210,553 - SM_b20201 0.13 +0.6 210,553 - SM_b20201 0.13 -0.8 210,553 - SM_b20201 0.13 -0.2 210,658 + SM_b20201 0.25 +0.1 210,730 + SM_b20201 0.34 +0.0 210,730 + SM_b20201 0.34 -0.2 210,730 + SM_b20201 0.34 -0.3 210,731 - SM_b20201 0.34 -0.1 210,731 - SM_b20201 0.34 -0.7 210,732 + SM_b20201 0.34 +0.8 210,732 + SM_b20201 0.34 -0.1 210,732 + SM_b20201 0.34 +0.1 210,733 - SM_b20201 0.34 -0.9 210,839 + SM_b20201 0.46 +0.1 211,017 + SM_b20201 0.67 +0.7 211,018 - SM_b20201 0.67 +0.2 211,223 + -0.9 211,307 - -0.5 211,307 - -0.9
Or see this region's nucleotide sequence