Strain Fitness in Sinorhizobium meliloti 1021 around SMc04261

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04260 and SMc04261 are separated by 107 nucleotidesSMc04261 and SMc04262 overlap by 25 nucleotides SMc04260: SMc04260 - transcriptional regulator, at 2,089,458 to 2,090,528 SMc04260 SMc04261: SMc04261 - hypothetical protein, at 2,090,636 to 2,091,031 SMc04261 SMc04262: SMc04262 - 6-phosphogluconate dehydrogenase, at 2,091,007 to 2,092,437 SMc04262 Position (kb) 2090 2091 2092Strain fitness (log2 ratio) -2 -1 0 1at 2089.653 kb on + strand, within SMc04260at 2089.794 kb on + strand, within SMc04260at 2089.795 kb on - strand, within SMc04260at 2089.795 kb on - strand, within SMc04260at 2089.815 kb on + strand, within SMc04260at 2089.852 kb on - strand, within SMc04260at 2089.918 kb on + strand, within SMc04260at 2089.919 kb on - strand, within SMc04260at 2089.925 kb on - strand, within SMc04260at 2089.969 kb on - strand, within SMc04260at 2089.990 kb on - strand, within SMc04260at 2089.990 kb on - strand, within SMc04260at 2090.155 kb on + strand, within SMc04260at 2090.380 kb on + strand, within SMc04260at 2090.380 kb on + strand, within SMc04260at 2090.380 kb on + strand, within SMc04260at 2090.391 kb on + strand, within SMc04260at 2090.391 kb on + strand, within SMc04260at 2090.392 kb on - strand, within SMc04260at 2090.392 kb on - strand, within SMc04260at 2090.527 kb on - strandat 2090.658 kb on + strandat 2090.659 kb on - strandat 2090.659 kb on - strandat 2090.659 kb on - strandat 2090.739 kb on + strand, within SMc04261at 2090.739 kb on + strand, within SMc04261at 2090.800 kb on - strand, within SMc04261at 2090.813 kb on + strand, within SMc04261at 2090.813 kb on + strand, within SMc04261at 2090.814 kb on - strand, within SMc04261at 2090.814 kb on - strand, within SMc04261at 2091.134 kb on + strandat 2091.679 kb on - strand, within SMc04262at 2091.746 kb on + strand, within SMc04262at 2091.833 kb on + strand, within SMc04262at 2091.834 kb on - strand, within SMc04262at 2091.939 kb on + strand, within SMc04262at 2091.944 kb on + strand, within SMc04262

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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2,089,653 + SMc04260 0.18 +1.1
2,089,794 + SMc04260 0.31 -0.4
2,089,795 - SMc04260 0.31 +0.1
2,089,795 - SMc04260 0.31 +0.0
2,089,815 + SMc04260 0.33 -0.3
2,089,852 - SMc04260 0.37 -0.3
2,089,918 + SMc04260 0.43 +0.3
2,089,919 - SMc04260 0.43 +0.6
2,089,925 - SMc04260 0.44 +0.9
2,089,969 - SMc04260 0.48 +0.1
2,089,990 - SMc04260 0.50 +1.5
2,089,990 - SMc04260 0.50 +0.8
2,090,155 + SMc04260 0.65 -0.7
2,090,380 + SMc04260 0.86 -0.3
2,090,380 + SMc04260 0.86 +0.1
2,090,380 + SMc04260 0.86 +0.4
2,090,391 + SMc04260 0.87 +1.2
2,090,391 + SMc04260 0.87 +1.7
2,090,392 - SMc04260 0.87 +1.2
2,090,392 - SMc04260 0.87 -0.0
2,090,527 - +0.7
2,090,658 + +0.7
2,090,659 - -0.2
2,090,659 - -0.2
2,090,659 - -0.7
2,090,739 + SMc04261 0.26 -0.4
2,090,739 + SMc04261 0.26 -2.5
2,090,800 - SMc04261 0.41 -0.1
2,090,813 + SMc04261 0.45 -0.1
2,090,813 + SMc04261 0.45 -0.5
2,090,814 - SMc04261 0.45 -0.1
2,090,814 - SMc04261 0.45 -0.4
2,091,134 + +0.5
2,091,679 - SMc04262 0.47 +0.2
2,091,746 + SMc04262 0.52 +0.1
2,091,833 + SMc04262 0.58 +0.1
2,091,834 - SMc04262 0.58 +0.1
2,091,939 + SMc04262 0.65 +0.8
2,091,944 + SMc04262 0.65 +0.2

Or see this region's nucleotide sequence