Strain Fitness in Sinorhizobium meliloti 1021 around SMc03781

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03778 and SMc03780 are separated by 44 nucleotidesSMc03780 and SMc03781 are separated by 152 nucleotidesSMc03781 and SMc03782 are separated by 132 nucleotides SMc03778: SMc03778 - nicotinic acid mononucleotide adenylyltransferase, at 3,444,693 to 3,445,280 SMc03778 SMc03780: SMc03780 - hypothetical protein, at 3,445,325 to 3,445,816 SMc03780 SMc03781: SMc03781 - rRNA large subunit methyltransferase, at 3,445,969 to 3,446,451 SMc03781 SMc03782: SMc03782 - signal peptide protein, at 3,446,584 to 3,447,966 SMc03782 Position (kb) 3445 3446 3447Strain fitness (log2 ratio) -2 -1 0 1 2at 3445.317 kb on + strandat 3445.336 kb on + strandat 3445.336 kb on + strandat 3445.341 kb on - strandat 3445.510 kb on - strand, within SMc03780at 3445.510 kb on - strand, within SMc03780at 3445.532 kb on - strand, within SMc03780at 3445.760 kb on + strand, within SMc03780at 3445.761 kb on - strand, within SMc03780at 3445.898 kb on + strandat 3445.932 kb on + strandat 3445.974 kb on + strandat 3445.974 kb on + strandat 3446.252 kb on + strand, within SMc03781at 3446.252 kb on + strand, within SMc03781at 3446.253 kb on - strand, within SMc03781at 3446.253 kb on - strand, within SMc03781at 3446.282 kb on + strand, within SMc03781at 3446.405 kb on - strandat 3446.438 kb on - strandat 3446.493 kb on + strandat 3446.493 kb on + strandat 3446.493 kb on + strandat 3446.493 kb on + strandat 3446.497 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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3,445,317 + -0.9
3,445,336 + +1.9
3,445,336 + +1.2
3,445,341 - -2.2
3,445,510 - SMc03780 0.38 +0.3
3,445,510 - SMc03780 0.38 -1.0
3,445,532 - SMc03780 0.42 +0.8
3,445,760 + SMc03780 0.88 -1.0
3,445,761 - SMc03780 0.89 +0.5
3,445,898 + -0.5
3,445,932 + +0.9
3,445,974 + -0.6
3,445,974 + +0.2
3,446,252 + SMc03781 0.59 -0.2
3,446,252 + SMc03781 0.59 +1.3
3,446,253 - SMc03781 0.59 +0.4
3,446,253 - SMc03781 0.59 -0.3
3,446,282 + SMc03781 0.65 +0.1
3,446,405 - -0.2
3,446,438 - -0.3
3,446,493 + +0.8
3,446,493 + -0.0
3,446,493 + -0.2
3,446,493 + -0.2
3,446,497 + +0.1

Or see this region's nucleotide sequence