Strain Fitness in Sinorhizobium meliloti 1021 around SMc02287

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02328 and SMc02286 are separated by 222 nucleotidesSMc02286 and SMc02287 are separated by 80 nucleotidesSMc02287 and SMc02289 are separated by 913 nucleotides SMc02328: SMc02328 - hypothetical protein, at 660,620 to 661,264 SMc02328 SMc02286: SMc02286 - hypothetical protein, at 661,487 to 661,735 SMc02286 SMc02287: SMc02287 - DNA-invertase, at 661,816 to 662,370 SMc02287 SMc02289: SMc02289 - transposase ISRM11/ISRM2011-2, at 663,284 to 663,889 SMc02289 Position (kb) 661 662 663Strain fitness (log2 ratio) -2 -1 0 1at 661.046 kb on - strand, within SMc02328at 661.046 kb on - strand, within SMc02328at 661.076 kb on - strand, within SMc02328at 661.076 kb on - strand, within SMc02328at 661.104 kb on + strand, within SMc02328at 661.257 kb on + strandat 661.258 kb on - strandat 661.258 kb on - strandat 661.396 kb on + strandat 661.396 kb on + strandat 661.396 kb on + strandat 661.409 kb on + strandat 661.409 kb on + strandat 661.475 kb on + strandat 661.476 kb on - strandat 661.476 kb on - strandat 661.476 kb on - strandat 661.476 kb on - strandat 661.489 kb on - strandat 661.489 kb on - strandat 661.489 kb on - strandat 661.495 kb on + strandat 661.495 kb on + strandat 661.501 kb on + strandat 661.501 kb on + strandat 661.582 kb on - strand, within SMc02286at 661.582 kb on - strand, within SMc02286at 661.677 kb on - strand, within SMc02286at 661.677 kb on - strand, within SMc02286at 661.677 kb on - strand, within SMc02286at 661.677 kb on - strand, within SMc02286at 661.677 kb on - strand, within SMc02286at 661.677 kb on - strand, within SMc02286at 661.677 kb on - strand, within SMc02286at 661.794 kb on + strandat 661.794 kb on + strandat 661.794 kb on + strandat 662.050 kb on - strand, within SMc02287at 662.104 kb on + strand, within SMc02287at 662.105 kb on - strand, within SMc02287at 662.347 kb on - strandat 662.409 kb on + strandat 662.501 kb on + strandat 662.502 kb on - strandat 662.502 kb on - strandat 662.542 kb on + strandat 662.544 kb on + strandat 662.545 kb on - strandat 662.552 kb on - strandat 662.601 kb on + strandat 662.601 kb on + strandat 662.602 kb on - strandat 662.602 kb on - strandat 662.602 kb on - strandat 662.656 kb on + strandat 662.656 kb on + strandat 662.656 kb on + strandat 662.657 kb on - strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.660 kb on - strandat 662.660 kb on - strandat 662.662 kb on + strandat 662.663 kb on - strandat 662.858 kb on + strandat 662.942 kb on + strandat 662.942 kb on + strandat 662.942 kb on + strandat 662.975 kb on + strandat 663.010 kb on + strandat 663.010 kb on + strandat 663.010 kb on + strandat 663.010 kb on + strandat 663.010 kb on + strandat 663.011 kb on - strandat 663.011 kb on - strandat 663.011 kb on - strandat 663.011 kb on - strandat 663.014 kb on - strandat 663.045 kb on - strandat 663.068 kb on - strandat 663.068 kb on - strandat 663.097 kb on + strandat 663.097 kb on + strandat 663.098 kb on - strandat 663.098 kb on - strandat 663.098 kb on - strandat 663.098 kb on - strandat 663.135 kb on - strandat 663.153 kb on + strandat 663.153 kb on + strandat 663.154 kb on - strandat 663.278 kb on - strandat 663.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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661,046 - SMc02328 0.66 +0.1
661,046 - SMc02328 0.66 +0.1
661,076 - SMc02328 0.71 +0.4
661,076 - SMc02328 0.71 +0.1
661,104 + SMc02328 0.75 -1.3
661,257 + +1.1
661,258 - +0.0
661,258 - +0.9
661,396 + +0.0
661,396 + -0.2
661,396 + +1.7
661,409 + -0.7
661,409 + +1.0
661,475 + +0.3
661,476 - -0.8
661,476 - -0.2
661,476 - +1.3
661,476 - +0.2
661,489 - +0.3
661,489 - -0.4
661,489 - -0.2
661,495 + +1.1
661,495 + +1.1
661,501 + -0.7
661,501 + -0.5
661,582 - SMc02286 0.38 +0.1
661,582 - SMc02286 0.38 +0.4
661,677 - SMc02286 0.76 -0.3
661,677 - SMc02286 0.76 -0.3
661,677 - SMc02286 0.76 -0.4
661,677 - SMc02286 0.76 -1.3
661,677 - SMc02286 0.76 -0.2
661,677 - SMc02286 0.76 -0.2
661,677 - SMc02286 0.76 -0.3
661,794 + +0.5
661,794 + +0.4
661,794 + -0.9
662,050 - SMc02287 0.42 -0.5
662,104 + SMc02287 0.52 -1.3
662,105 - SMc02287 0.52 -1.7
662,347 - -0.4
662,409 + -0.2
662,501 + +0.7
662,502 - +1.2
662,502 - +0.8
662,542 + -0.2
662,544 + -0.0
662,545 - +0.1
662,552 - +0.6
662,601 + -0.4
662,601 + -0.4
662,602 - -0.2
662,602 - -0.2
662,602 - +1.0
662,656 + +0.5
662,656 + +0.6
662,656 + +0.2
662,657 - +1.7
662,659 + +0.1
662,659 + -0.4
662,659 + -0.6
662,659 + -0.3
662,659 + +0.3
662,659 + -0.1
662,660 - -0.1
662,660 - -1.1
662,662 + +0.0
662,663 - -0.9
662,858 + +0.3
662,942 + -0.2
662,942 + -0.3
662,942 + +0.1
662,975 + +0.7
663,010 + +0.0
663,010 + +0.0
663,010 + -0.4
663,010 + +0.8
663,010 + -0.5
663,011 - -0.5
663,011 - -0.1
663,011 - +0.2
663,011 - -0.2
663,014 - +0.8
663,045 - -0.6
663,068 - -1.9
663,068 - -0.1
663,097 + -0.5
663,097 + +0.4
663,098 - -0.0
663,098 - +0.2
663,098 - +0.2
663,098 - -0.3
663,135 - +0.3
663,153 + -0.2
663,153 + +0.3
663,154 - -0.3
663,278 - +0.8
663,278 - -0.5

Or see this region's nucleotide sequence