Strain Fitness in Sinorhizobium meliloti 1021 around SMc02084

Experiment: 3-octanone 0.456 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02085 and SMc02084 are separated by 6 nucleotidesSMc02084 and SMc02083 are separated by 975 nucleotides SMc02085: SMc02085 - biopolymer transport transmembrane protein, at 1,626,342 to 1,627,328 SMc02085 SMc02084: SMc02084 - biopolymer transport transmembrane protein, at 1,627,335 to 1,627,760 SMc02084 SMc02083: SMc02083 - methyltransferase (PCM-like) transmembrane protein, at 1,628,736 to 1,629,395 SMc02083 Position (kb) 1627 1628Strain fitness (log2 ratio) -1 0 1at 1626.440 kb on - strandat 1626.440 kb on - strandat 1626.440 kb on - strandat 1626.440 kb on - strandat 1626.718 kb on - strand, within SMc02085at 1626.718 kb on - strand, within SMc02085at 1626.734 kb on + strand, within SMc02085at 1627.155 kb on + strand, within SMc02085at 1627.155 kb on + strand, within SMc02085at 1627.156 kb on - strand, within SMc02085at 1627.156 kb on - strand, within SMc02085at 1627.161 kb on + strand, within SMc02085at 1627.161 kb on + strand, within SMc02085at 1627.161 kb on + strand, within SMc02085at 1627.185 kb on + strand, within SMc02085at 1627.186 kb on - strand, within SMc02085at 1627.231 kb on + strandat 1627.231 kb on + strandat 1627.232 kb on - strandat 1627.669 kb on - strand, within SMc02084at 1627.903 kb on + strandat 1627.913 kb on + strandat 1627.913 kb on + strandat 1627.914 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1627.936 kb on - strandat 1628.045 kb on - strandat 1628.045 kb on - strandat 1628.180 kb on - strandat 1628.180 kb on - strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.316 kb on + strandat 1628.322 kb on + strandat 1628.322 kb on + strandat 1628.371 kb on + strandat 1628.372 kb on - strandat 1628.372 kb on - strandat 1628.390 kb on + strandat 1628.545 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
remove
1,626,440 - +0.5
1,626,440 - -0.3
1,626,440 - -0.1
1,626,440 - -0.8
1,626,718 - SMc02085 0.38 -1.0
1,626,718 - SMc02085 0.38 +0.0
1,626,734 + SMc02085 0.40 +0.2
1,627,155 + SMc02085 0.82 -0.1
1,627,155 + SMc02085 0.82 +0.0
1,627,156 - SMc02085 0.82 +0.7
1,627,156 - SMc02085 0.82 +0.1
1,627,161 + SMc02085 0.83 +0.8
1,627,161 + SMc02085 0.83 +0.0
1,627,161 + SMc02085 0.83 +0.4
1,627,185 + SMc02085 0.85 +0.2
1,627,186 - SMc02085 0.86 -1.1
1,627,231 + -1.3
1,627,231 + -0.6
1,627,232 - +0.7
1,627,669 - SMc02084 0.78 +1.1
1,627,903 + +0.4
1,627,913 + -0.3
1,627,913 + +0.2
1,627,914 - -0.9
1,627,936 - -0.2
1,627,936 - -0.5
1,627,936 - -1.6
1,627,936 - +0.3
1,627,936 - +0.0
1,627,936 - +0.1
1,628,045 - +0.3
1,628,045 - +0.1
1,628,180 - -0.2
1,628,180 - +0.3
1,628,316 + -0.4
1,628,316 + +0.4
1,628,316 + -0.1
1,628,316 + +0.1
1,628,316 + +1.2
1,628,316 + -0.0
1,628,316 + -0.4
1,628,322 + +0.4
1,628,322 + -0.3
1,628,371 + -0.4
1,628,372 - +0.2
1,628,372 - +0.7
1,628,390 + -0.3
1,628,545 + +0.8

Or see this region's nucleotide sequence