Strain Fitness in Sinorhizobium meliloti 1021 around SMc01217

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01219 and SMc01218 are separated by 83 nucleotidesSMc01218 and SMc01217 are separated by 292 nucleotidesSMc01217 and SMc01216 are separated by 3 nucleotidesSMc01216 and SMc01215 are separated by 128 nucleotides SMc01219: SMc01219 - lipopolysaccharide core biosynthesis mannosyltransferase, at 1,705,047 to 1,706,102 SMc01219 SMc01218: SMc01218 - transcription elongation factor GreA, at 1,706,186 to 1,706,662 SMc01218 SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424 SMc01217 SMc01216: SMc01216 - hypothetical protein, at 1,708,428 to 1,708,730 SMc01216 SMc01215: SMc01215 - carbamoyl phosphate synthase large subunit, at 1,708,859 to 1,712,350 SMc01215 Position (kb) 1706 1707 1708 1709Strain fitness (log2 ratio) -1 0 1 2at 1706.775 kb on - strandat 1706.775 kb on - strandat 1706.775 kb on - strandat 1706.882 kb on - strandat 1706.882 kb on - strandat 1706.882 kb on - strandat 1706.892 kb on + strandat 1706.915 kb on + strandat 1706.915 kb on + strandat 1706.916 kb on - strandat 1706.933 kb on - strandat 1706.939 kb on + strandat 1706.940 kb on - strandat 1706.940 kb on - strandat 1706.962 kb on + strandat 1707.189 kb on + strand, within SMc01217at 1707.368 kb on + strand, within SMc01217at 1707.369 kb on - strand, within SMc01217at 1707.369 kb on - strand, within SMc01217at 1707.387 kb on + strand, within SMc01217at 1707.387 kb on + strand, within SMc01217at 1707.388 kb on - strand, within SMc01217at 1707.454 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.507 kb on + strand, within SMc01217at 1707.508 kb on - strand, within SMc01217at 1707.542 kb on - strand, within SMc01217at 1707.658 kb on + strand, within SMc01217at 1707.658 kb on + strand, within SMc01217at 1707.659 kb on - strand, within SMc01217at 1707.659 kb on - strand, within SMc01217at 1707.681 kb on - strand, within SMc01217at 1707.873 kb on + strand, within SMc01217at 1707.873 kb on + strand, within SMc01217at 1707.874 kb on - strand, within SMc01217at 1707.874 kb on - strand, within SMc01217at 1707.874 kb on - strand, within SMc01217at 1707.882 kb on + strand, within SMc01217at 1707.950 kb on - strand, within SMc01217at 1708.084 kb on - strand, within SMc01217at 1708.230 kb on + strand, within SMc01217at 1708.637 kb on - strand, within SMc01216at 1708.639 kb on + strand, within SMc01216at 1708.640 kb on - strand, within SMc01216at 1708.721 kb on - strandat 1708.723 kb on - strandat 1709.368 kb on + strand, within SMc01215

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,706,775 - +0.0
1,706,775 - -0.9
1,706,775 - -0.1
1,706,882 - -0.1
1,706,882 - -0.3
1,706,882 - +0.2
1,706,892 + +0.7
1,706,915 + -0.1
1,706,915 + -0.1
1,706,916 - +0.4
1,706,933 - -0.2
1,706,939 + -0.4
1,706,940 - +0.6
1,706,940 - -0.1
1,706,962 + +0.1
1,707,189 + SMc01217 0.16 +0.4
1,707,368 + SMc01217 0.28 +0.5
1,707,369 - SMc01217 0.28 +0.2
1,707,369 - SMc01217 0.28 +0.3
1,707,387 + SMc01217 0.29 +0.3
1,707,387 + SMc01217 0.29 +0.7
1,707,388 - SMc01217 0.29 +0.1
1,707,454 + SMc01217 0.34 +0.0
1,707,507 + SMc01217 0.38 +0.4
1,707,507 + SMc01217 0.38 +1.0
1,707,507 + SMc01217 0.38 +0.1
1,707,508 - SMc01217 0.38 +2.1
1,707,542 - SMc01217 0.40 -0.1
1,707,658 + SMc01217 0.48 -0.3
1,707,658 + SMc01217 0.48 +0.4
1,707,659 - SMc01217 0.48 -0.1
1,707,659 - SMc01217 0.48 -0.0
1,707,681 - SMc01217 0.49 -0.1
1,707,873 + SMc01217 0.62 +0.3
1,707,873 + SMc01217 0.62 -0.9
1,707,874 - SMc01217 0.63 +0.2
1,707,874 - SMc01217 0.63 +0.4
1,707,874 - SMc01217 0.63 -0.1
1,707,882 + SMc01217 0.63 +0.0
1,707,950 - SMc01217 0.68 +0.4
1,708,084 - SMc01217 0.77 +0.2
1,708,230 + SMc01217 0.87 +0.0
1,708,637 - SMc01216 0.69 +0.1
1,708,639 + SMc01216 0.70 -0.3
1,708,640 - SMc01216 0.70 -0.0
1,708,721 - -1.2
1,708,723 - +0.2
1,709,368 + SMc01215 0.15 +0.7

Or see this region's nucleotide sequence