Strain Fitness in Sinorhizobium meliloti 1021 around SMa2389

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2385 and SMa2387 are separated by 68 nucleotidesSMa2387 and SMa2389 are separated by 208 nucleotidesSMa2389 and SMa2391 are separated by 304 nucleotides SMa2385: SMa2385 - ABC transporter ATP-binding protein, at 1,346,715 to 1,348,304 SMa2385 SMa2387: SMa2387 - TetR family transcriptional regulator, at 1,348,373 to 1,349,071 SMa2387 SMa2389: SMa2389 - OsmC-like protein, at 1,349,280 to 1,349,696 SMa2389 SMa2391: SMa2391 - replication initiation protein RepC, at 1,350,001 to 1,351,206 SMa2391 Position (kb) 1349 1350Strain fitness (log2 ratio) -2 -1 0 1 2at 1348.313 kb on + strandat 1348.314 kb on - strandat 1348.314 kb on - strandat 1348.314 kb on - strandat 1348.356 kb on - strandat 1348.420 kb on + strandat 1348.421 kb on - strandat 1348.708 kb on + strand, within SMa2387at 1348.748 kb on + strand, within SMa2387at 1348.760 kb on + strand, within SMa2387at 1348.761 kb on - strand, within SMa2387at 1348.761 kb on - strand, within SMa2387at 1348.761 kb on - strandat 1348.860 kb on + strand, within SMa2387at 1348.897 kb on + strand, within SMa2387at 1348.897 kb on + strand, within SMa2387at 1348.897 kb on + strand, within SMa2387at 1348.897 kb on + strand, within SMa2387at 1348.897 kb on + strand, within SMa2387at 1348.898 kb on - strand, within SMa2387at 1348.902 kb on + strand, within SMa2387at 1348.902 kb on + strand, within SMa2387at 1349.198 kb on + strandat 1349.230 kb on - strandat 1349.238 kb on + strandat 1349.329 kb on + strand, within SMa2389at 1349.489 kb on + strand, within SMa2389at 1349.489 kb on + strand, within SMa2389at 1349.490 kb on - strand, within SMa2389at 1349.511 kb on + strand, within SMa2389at 1349.522 kb on + strand, within SMa2389at 1349.523 kb on - strand, within SMa2389at 1349.654 kb on + strand, within SMa2389at 1349.670 kb on - strandat 1349.671 kb on + strandat 1349.759 kb on + strandat 1349.759 kb on + strandat 1349.759 kb on + strandat 1349.760 kb on - strandat 1349.805 kb on + strandat 1349.806 kb on - strandat 1349.806 kb on - strandat 1349.824 kb on + strandat 1349.848 kb on + strandat 1349.953 kb on + strandat 1349.953 kb on + strandat 1349.953 kb on + strandat 1349.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,348,313 + +0.3
1,348,314 - -0.3
1,348,314 - +0.7
1,348,314 - -0.2
1,348,356 - -0.3
1,348,420 + +1.5
1,348,421 - +0.4
1,348,708 + SMa2387 0.48 -0.3
1,348,748 + SMa2387 0.54 -0.6
1,348,760 + SMa2387 0.55 -0.1
1,348,761 - SMa2387 0.56 +0.2
1,348,761 - SMa2387 0.56 -1.9
1,348,761 - -0.6
1,348,860 + SMa2387 0.70 -0.0
1,348,897 + SMa2387 0.75 -0.0
1,348,897 + SMa2387 0.75 -0.3
1,348,897 + SMa2387 0.75 -0.3
1,348,897 + SMa2387 0.75 -0.0
1,348,897 + SMa2387 0.75 +0.6
1,348,898 - SMa2387 0.75 +0.7
1,348,902 + SMa2387 0.76 +2.4
1,348,902 + SMa2387 0.76 +0.2
1,349,198 + -0.6
1,349,230 - -0.0
1,349,238 + -1.1
1,349,329 + SMa2389 0.12 +2.7
1,349,489 + SMa2389 0.50 -0.7
1,349,489 + SMa2389 0.50 +0.9
1,349,490 - SMa2389 0.50 +0.9
1,349,511 + SMa2389 0.55 +2.2
1,349,522 + SMa2389 0.58 -0.4
1,349,523 - SMa2389 0.58 +1.4
1,349,654 + SMa2389 0.90 +1.7
1,349,670 - -0.7
1,349,671 + -0.3
1,349,759 + +1.0
1,349,759 + -0.8
1,349,759 + +0.1
1,349,760 - +0.7
1,349,805 + -0.3
1,349,806 - -0.6
1,349,806 - +0.2
1,349,824 + -0.1
1,349,848 + +0.0
1,349,953 + +0.1
1,349,953 + -0.6
1,349,953 + +0.6
1,349,953 + -0.0

Or see this region's nucleotide sequence