Strain Fitness in Sinorhizobium meliloti 1021 around SMa1924

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1924 and SMa1927 are separated by 336 nucleotides SMa1924: SMa1924 - hypothetical protein, at 1,095,016 to 1,095,690 SMa1924 SMa1927: SMa1927 - hypothetical protein, at 1,096,027 to 1,097,019 SMa1927 Position (kb) 1095 1096Strain fitness (log2 ratio) -1 0 1 2at 1094.022 kb on - strandat 1094.022 kb on - strandat 1094.022 kb on - strandat 1094.024 kb on + strandat 1094.024 kb on + strandat 1094.024 kb on + strandat 1094.510 kb on + strandat 1094.510 kb on + strandat 1094.510 kb on + strandat 1094.511 kb on - strandat 1094.773 kb on - strandat 1094.773 kb on - strandat 1094.773 kb on - strandat 1094.829 kb on + strandat 1094.830 kb on - strandat 1094.898 kb on + strandat 1095.579 kb on - strand, within SMa1924at 1095.670 kb on + strandat 1095.718 kb on - strandat 1095.806 kb on - strandat 1095.850 kb on + strandat 1095.906 kb on + strandat 1095.907 kb on - strandat 1095.966 kb on + strandat 1095.967 kb on - strandat 1095.967 kb on - strandat 1096.007 kb on - strandat 1096.032 kb on - strandat 1096.309 kb on - strand, within SMa1927at 1096.510 kb on + strand, within SMa1927at 1096.510 kb on + strand, within SMa1927at 1096.510 kb on + strand, within SMa1927at 1096.510 kb on + strandat 1096.511 kb on - strand, within SMa1927at 1096.539 kb on - strandat 1096.590 kb on + strand, within SMa1927at 1096.590 kb on + strand, within SMa1927at 1096.591 kb on - strand, within SMa1927

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,094,022 - +0.1
1,094,022 - -0.5
1,094,022 - +0.7
1,094,024 + +0.1
1,094,024 + +0.6
1,094,024 + +0.1
1,094,510 + +0.4
1,094,510 + +1.0
1,094,510 + -0.6
1,094,511 - +0.7
1,094,773 - -0.6
1,094,773 - +0.7
1,094,773 - +0.2
1,094,829 + +0.6
1,094,830 - -0.8
1,094,898 + -0.6
1,095,579 - SMa1924 0.83 +1.2
1,095,670 + -0.9
1,095,718 - +0.3
1,095,806 - -0.6
1,095,850 + +0.2
1,095,906 + -0.1
1,095,907 - +0.7
1,095,966 + -0.5
1,095,967 - +0.2
1,095,967 - +1.0
1,096,007 - +0.1
1,096,032 - -1.1
1,096,309 - SMa1927 0.28 +0.4
1,096,510 + SMa1927 0.49 +1.1
1,096,510 + SMa1927 0.49 -0.0
1,096,510 + SMa1927 0.49 +0.1
1,096,510 + -0.3
1,096,511 - SMa1927 0.49 +0.2
1,096,539 - -0.6
1,096,590 + SMa1927 0.57 +0.1
1,096,590 + SMa1927 0.57 +2.7
1,096,591 - SMa1927 0.57 +0.7

Or see this region's nucleotide sequence