Strain Fitness in Sinorhizobium meliloti 1021 around SMa1413

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1410 and SMa1413 are separated by 396 nucleotidesSMa1413 and SMa1414 are separated by 227 nucleotides SMa1410: SMa1410 - oxidoreductase, at 775,888 to 776,721 SMa1410 SMa1413: SMa1413 - hypothetical protein, at 777,118 to 777,393 SMa1413 SMa1414: SMa1414 - Dehydrogenase, FAD-dependent, at 777,621 to 779,216 SMa1414 Position (kb) 777 778Strain fitness (log2 ratio) -2 -1 0 1 2at 776.337 kb on - strand, within SMa1410at 776.337 kb on - strand, within SMa1410at 776.337 kb on - strand, within SMa1410at 776.562 kb on + strand, within SMa1410at 776.562 kb on + strand, within SMa1410at 776.562 kb on + strand, within SMa1410at 776.562 kb on + strand, within SMa1410at 776.562 kb on + strand, within SMa1410at 776.563 kb on - strand, within SMa1410at 776.606 kb on + strand, within SMa1410at 776.606 kb on + strand, within SMa1410at 776.607 kb on - strand, within SMa1410at 776.668 kb on + strandat 776.668 kb on + strandat 776.720 kb on - strandat 776.764 kb on + strandat 776.789 kb on - strandat 776.814 kb on - strandat 776.814 kb on - strandat 776.839 kb on + strandat 776.864 kb on + strandat 776.864 kb on + strandat 776.864 kb on + strandat 776.865 kb on - strandat 776.865 kb on - strandat 776.865 kb on - strandat 776.871 kb on - strandat 776.893 kb on - strandat 776.893 kb on - strandat 776.934 kb on + strandat 776.934 kb on + strandat 776.934 kb on + strandat 776.935 kb on - strandat 776.935 kb on - strandat 776.935 kb on - strandat 776.936 kb on + strandat 776.936 kb on + strandat 776.957 kb on + strandat 776.957 kb on + strandat 776.958 kb on - strandat 776.959 kb on + strandat 776.960 kb on - strandat 776.960 kb on - strandat 777.058 kb on + strandat 777.058 kb on + strandat 777.331 kb on + strand, within SMa1413at 777.331 kb on + strand, within SMa1413at 777.534 kb on + strandat 777.534 kb on + strandat 777.535 kb on - strandat 777.562 kb on - strandat 777.672 kb on - strandat 777.776 kb on + strandat 777.777 kb on - strandat 777.777 kb on - strandat 777.777 kb on - strandat 777.841 kb on + strand, within SMa1414at 778.285 kb on + strand, within SMa1414at 778.285 kb on + strand, within SMa1414at 778.285 kb on + strand, within SMa1414at 778.371 kb on - strand, within SMa1414at 778.371 kb on - strand, within SMa1414

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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776,337 - SMa1410 0.54 -0.3
776,337 - SMa1410 0.54 -0.4
776,337 - SMa1410 0.54 -0.2
776,562 + SMa1410 0.81 +0.5
776,562 + SMa1410 0.81 -0.4
776,562 + SMa1410 0.81 -0.6
776,562 + SMa1410 0.81 -1.6
776,562 + SMa1410 0.81 +0.2
776,563 - SMa1410 0.81 +0.5
776,606 + SMa1410 0.86 -0.4
776,606 + SMa1410 0.86 -0.5
776,607 - SMa1410 0.86 -1.2
776,668 + +0.7
776,668 + +0.7
776,720 - -1.6
776,764 + -2.0
776,789 - +0.2
776,814 - +1.7
776,814 - +0.1
776,839 + +1.1
776,864 + +0.1
776,864 + -2.2
776,864 + +0.1
776,865 - +0.7
776,865 - +0.7
776,865 - -1.3
776,871 - -0.7
776,893 - -0.4
776,893 - -2.0
776,934 + -0.1
776,934 + +0.8
776,934 + +0.7
776,935 - -0.6
776,935 - +0.4
776,935 - -0.2
776,936 + -0.2
776,936 + -0.5
776,957 + +0.5
776,957 + +0.1
776,958 - -0.8
776,959 + -2.0
776,960 - +0.6
776,960 - +0.7
777,058 + -1.3
777,058 + +1.3
777,331 + SMa1413 0.77 +0.2
777,331 + SMa1413 0.77 +1.9
777,534 + -0.0
777,534 + -0.5
777,535 - -0.2
777,562 - +1.0
777,672 - -0.2
777,776 + +0.5
777,777 - +0.5
777,777 - -0.4
777,777 - -0.6
777,841 + SMa1414 0.14 +0.9
778,285 + SMa1414 0.42 -0.3
778,285 + SMa1414 0.42 -0.4
778,285 + SMa1414 0.42 -0.3
778,371 - SMa1414 0.47 -0.1
778,371 - SMa1414 0.47 -0.0

Or see this region's nucleotide sequence