Strain Fitness in Sinorhizobium meliloti 1021 around SMa1233

Experiment: 3-octanone 0.456 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1231 and SMa1232 are separated by 63 nucleotidesSMa1232 and SMa1233 are separated by 3 nucleotidesSMa1233 and SMa1236 overlap by 31 nucleotides SMa1231: SMa1231 - hypothetical protein, at 675,132 to 675,956 SMa1231 SMa1232: SMa1232 - NapC membrane-bound tetraheme cytochrome c subunit, at 676,020 to 676,721 SMa1232 SMa1233: SMa1233 - NapB periplasmic nitrate reductase cytochrome c- type subunit, at 676,725 to 677,228 SMa1233 SMa1236: SMa1236 - nitrate reductase catalytic subunit, at 677,198 to 679,702 SMa1236 Position (kb) 676 677 678Strain fitness (log2 ratio) -2 -1 0 1at 675.741 kb on + strand, within SMa1231at 675.741 kb on + strand, within SMa1231at 675.741 kb on + strand, within SMa1231at 675.742 kb on - strand, within SMa1231at 675.812 kb on - strand, within SMa1231at 675.865 kb on - strand, within SMa1231at 675.950 kb on + strandat 675.950 kb on + strandat 675.951 kb on - strandat 675.951 kb on - strandat 675.951 kb on - strandat 675.954 kb on + strandat 676.021 kb on + strandat 676.213 kb on + strand, within SMa1232at 676.374 kb on + strand, within SMa1232at 676.375 kb on - strand, within SMa1232at 676.506 kb on - strand, within SMa1232at 676.726 kb on + strandat 676.779 kb on - strand, within SMa1233at 676.879 kb on + strand, within SMa1233at 676.879 kb on + strand, within SMa1233at 676.880 kb on - strand, within SMa1233at 677.312 kb on + strandat 677.446 kb on + strandat 677.476 kb on - strand, within SMa1236at 677.554 kb on - strand, within SMa1236at 677.586 kb on + strand, within SMa1236at 677.628 kb on + strand, within SMa1236at 677.659 kb on - strand, within SMa1236at 677.739 kb on + strand, within SMa1236at 677.749 kb on - strand, within SMa1236at 677.790 kb on + strand, within SMa1236at 677.791 kb on - strand, within SMa1236at 677.791 kb on - strand, within SMa1236at 677.817 kb on + strand, within SMa1236at 677.850 kb on + strand, within SMa1236at 677.850 kb on + strand, within SMa1236at 677.913 kb on + strand, within SMa1236at 677.914 kb on - strand, within SMa1236at 678.064 kb on + strand, within SMa1236at 678.064 kb on + strand, within SMa1236at 678.065 kb on - strand, within SMa1236at 678.156 kb on + strand, within SMa1236at 678.204 kb on + strand, within SMa1236at 678.204 kb on + strand, within SMa1236at 678.205 kb on - strand, within SMa1236at 678.205 kb on - strand, within SMa1236

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
remove
675,741 + SMa1231 0.74 -0.3
675,741 + SMa1231 0.74 +0.3
675,741 + SMa1231 0.74 -0.9
675,742 - SMa1231 0.74 +0.7
675,812 - SMa1231 0.82 -0.2
675,865 - SMa1231 0.89 -0.2
675,950 + +0.7
675,950 + +1.3
675,951 - -0.3
675,951 - -1.5
675,951 - +0.3
675,954 + +0.8
676,021 + +0.3
676,213 + SMa1232 0.27 -0.1
676,374 + SMa1232 0.50 +0.1
676,375 - SMa1232 0.51 -0.3
676,506 - SMa1232 0.69 -0.9
676,726 + -0.1
676,779 - SMa1233 0.11 +0.1
676,879 + SMa1233 0.31 +1.0
676,879 + SMa1233 0.31 +0.4
676,880 - SMa1233 0.31 -0.0
677,312 + -0.9
677,446 + -0.1
677,476 - SMa1236 0.11 +0.5
677,554 - SMa1236 0.14 +0.5
677,586 + SMa1236 0.15 -0.1
677,628 + SMa1236 0.17 -1.5
677,659 - SMa1236 0.18 -0.0
677,739 + SMa1236 0.22 -0.1
677,749 - SMa1236 0.22 +0.1
677,790 + SMa1236 0.24 -0.0
677,791 - SMa1236 0.24 -1.5
677,791 - SMa1236 0.24 -1.9
677,817 + SMa1236 0.25 +0.2
677,850 + SMa1236 0.26 +0.3
677,850 + SMa1236 0.26 -0.3
677,913 + SMa1236 0.29 +0.1
677,914 - SMa1236 0.29 +0.4
678,064 + SMa1236 0.35 -0.4
678,064 + SMa1236 0.35 +0.1
678,065 - SMa1236 0.35 +0.6
678,156 + SMa1236 0.38 -0.2
678,204 + SMa1236 0.40 +0.6
678,204 + SMa1236 0.40 -0.2
678,205 - SMa1236 0.40 -1.3
678,205 - SMa1236 0.40 +1.4

Or see this region's nucleotide sequence