Strain Fitness in Sinorhizobium meliloti 1021 around SMa0857

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0855 and SMa0857 overlap by 1 nucleotidesSMa0857 and SMa0861 are separated by 370 nucleotides SMa0855: SMa0855 - sulfate adenylyltransferase subunit 2, at 472,764 to 473,663 SMa0855 SMa0857: SMa0857 - bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase, at 473,663 to 475,588 SMa0857 SMa0861: SMa0861 - transposase, fragment, at 475,959 to 476,840 SMa0861 Position (kb) 473 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 472.748 kb on + strandat 472.749 kb on - strandat 472.749 kb on - strandat 474.617 kb on - strand, within SMa0857at 474.617 kb on - strand, within SMa0857at 474.617 kb on - strand, within SMa0857at 474.617 kb on - strand, within SMa0857at 475.137 kb on - strand, within SMa0857at 475.444 kb on - strandat 475.483 kb on + strandat 475.485 kb on + strandat 475.485 kb on + strandat 475.486 kb on - strandat 475.486 kb on - strandat 475.586 kb on + strandat 475.587 kb on - strandat 475.600 kb on - strandat 475.655 kb on + strandat 475.655 kb on + strandat 475.655 kb on + strandat 475.657 kb on + strandat 475.672 kb on - strandat 475.725 kb on - strandat 475.794 kb on + strandat 475.795 kb on - strandat 475.815 kb on + strandat 475.815 kb on + strandat 475.816 kb on - strandat 475.816 kb on - strandat 475.896 kb on + strandat 475.896 kb on + strandat 475.897 kb on - strandat 476.179 kb on + strand, within SMa0861at 476.379 kb on - strand, within SMa0861at 476.379 kb on - strand, within SMa0861at 476.485 kb on + strand, within SMa0861at 476.496 kb on + strand, within SMa0861at 476.497 kb on - strand, within SMa0861at 476.497 kb on - strand, within SMa0861

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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472,748 + +0.0
472,749 - +1.2
472,749 - -0.2
474,617 - SMa0857 0.50 -0.1
474,617 - SMa0857 0.50 +1.0
474,617 - SMa0857 0.50 +0.5
474,617 - SMa0857 0.50 +0.7
475,137 - SMa0857 0.77 -1.2
475,444 - +0.8
475,483 + -0.4
475,485 + +1.5
475,485 + +0.0
475,486 - +2.4
475,486 - +0.4
475,586 + -0.5
475,587 - +0.0
475,600 - -0.3
475,655 + -0.2
475,655 + -1.0
475,655 + +0.7
475,657 + +0.1
475,672 - +0.7
475,725 - -0.8
475,794 + -0.5
475,795 - +0.2
475,815 + -0.3
475,815 + -0.5
475,816 - -0.1
475,816 - -1.1
475,896 + -0.3
475,896 + -1.0
475,897 - +1.6
476,179 + SMa0861 0.25 -0.1
476,379 - SMa0861 0.48 +0.2
476,379 - SMa0861 0.48 -0.5
476,485 + SMa0861 0.60 -1.9
476,496 + SMa0861 0.61 -0.1
476,497 - SMa0861 0.61 -0.2
476,497 - SMa0861 0.61 -0.7

Or see this region's nucleotide sequence