Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20924 and SM_b21672 are separated by 32 nucleotides SM_b21672 and SM_b20925 are separated by 100 nucleotides SM_b20925 and SM_b20926 are separated by 121 nucleotides SM_b20926 and SM_b20927 are separated by 8 nucleotides
SM_b20924: SM_b20924 - alpha-L-arabinofuranosidase, at 1,147,361 to 1,148,881
_b20924
SM_b21672: SM_b21672 - hypothetical protein, at 1,148,914 to 1,149,081
_b21672
SM_b20925: SM_b20925 - hypothetical protein, at 1,149,182 to 1,150,300
_b20925
SM_b20926: SM_b20926 - hypothetical protein, at 1,150,422 to 1,150,922
_b20926
SM_b20927: SM_b20927 - hypothetical protein, at 1,150,931 to 1,151,413
_b20927
Position (kb)
1149
1150
1151 Strain fitness (log2 ratio)
-2
-1
0
1 at 1148.187 kb on + strand, within SM_b20924 at 1148.188 kb on - strand, within SM_b20924 at 1148.224 kb on - strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.283 kb on + strand, within SM_b20924 at 1148.284 kb on - strand, within SM_b20924 at 1148.300 kb on + strand, within SM_b20924 at 1148.301 kb on - strand, within SM_b20924 at 1148.409 kb on + strand, within SM_b20924 at 1148.410 kb on - strand, within SM_b20924 at 1148.439 kb on + strand, within SM_b20924 at 1148.440 kb on - strand, within SM_b20924 at 1148.440 kb on - strand, within SM_b20924 at 1148.463 kb on + strand, within SM_b20924 at 1148.463 kb on + strand, within SM_b20924 at 1148.655 kb on + strand, within SM_b20924 at 1148.655 kb on + strand, within SM_b20924 at 1148.699 kb on - strand, within SM_b20924 at 1148.699 kb on - strand, within SM_b20924 at 1148.784 kb on + strand at 1148.821 kb on - strand at 1148.822 kb on + strand at 1148.848 kb on + strand at 1148.848 kb on + strand at 1148.849 kb on - strand at 1148.849 kb on - strand at 1148.849 kb on - strand at 1148.851 kb on - strand at 1148.851 kb on - strand at 1148.897 kb on - strand at 1148.897 kb on - strand at 1149.009 kb on + strand, within SM_b21672 at 1149.079 kb on + strand at 1149.080 kb on - strand at 1149.088 kb on - strand at 1149.174 kb on + strand at 1149.175 kb on - strand at 1149.264 kb on + strand at 1149.265 kb on - strand at 1149.408 kb on + strand, within SM_b20925 at 1149.409 kb on - strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.561 kb on + strand, within SM_b20925 at 1149.634 kb on + strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.635 kb on - strand, within SM_b20925 at 1149.637 kb on + strand, within SM_b20925 at 1149.638 kb on - strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.779 kb on + strand, within SM_b20925 at 1149.780 kb on - strand, within SM_b20925 at 1149.794 kb on - strand, within SM_b20925 at 1149.815 kb on + strand, within SM_b20925 at 1150.523 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.554 kb on + strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.555 kb on - strand, within SM_b20926 at 1150.886 kb on - strand at 1150.886 kb on - strand at 1150.895 kb on - strand at 1150.912 kb on + strand at 1150.912 kb on + strand at 1150.912 kb on + strand at 1150.912 kb on + strand at 1150.913 kb on - strand at 1150.932 kb on + strand at 1150.932 kb on + strand at 1151.032 kb on + strand, within SM_b20927 at 1151.032 kb on + strand, within SM_b20927 at 1151.033 kb on - strand, within SM_b20927 at 1151.197 kb on - strand, within SM_b20927 at 1151.220 kb on - strand, within SM_b20927 at 1151.220 kb on - strand, within SM_b20927
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 1,148,187 + SM_b20924 0.54 +0.9 1,148,188 - SM_b20924 0.54 -0.2 1,148,224 - SM_b20924 0.57 +0.0 1,148,283 + SM_b20924 0.61 -0.2 1,148,283 + SM_b20924 0.61 -0.5 1,148,284 - SM_b20924 0.61 -0.1 1,148,300 + SM_b20924 0.62 +0.5 1,148,301 - SM_b20924 0.62 -0.8 1,148,409 + SM_b20924 0.69 +1.1 1,148,410 - SM_b20924 0.69 +0.1 1,148,439 + SM_b20924 0.71 +0.2 1,148,440 - SM_b20924 0.71 -0.4 1,148,440 - SM_b20924 0.71 +0.4 1,148,463 + SM_b20924 0.72 +0.5 1,148,463 + SM_b20924 0.72 +0.1 1,148,655 + SM_b20924 0.85 -0.1 1,148,655 + SM_b20924 0.85 -0.3 1,148,699 - SM_b20924 0.88 +0.4 1,148,699 - SM_b20924 0.88 -0.3 1,148,784 + +0.7 1,148,821 - +0.5 1,148,822 + +0.7 1,148,848 + +0.7 1,148,848 + -0.6 1,148,849 - -1.8 1,148,849 - -0.2 1,148,849 - +0.1 1,148,851 - -0.2 1,148,851 - +0.0 1,148,897 - -0.3 1,148,897 - -0.8 1,149,009 + SM_b21672 0.57 -0.1 1,149,079 + +0.9 1,149,080 - -0.9 1,149,088 - +0.9 1,149,174 + +0.5 1,149,175 - +0.7 1,149,264 + +0.4 1,149,265 - -1.1 1,149,408 + SM_b20925 0.20 -1.0 1,149,409 - SM_b20925 0.20 -1.5 1,149,561 + SM_b20925 0.34 +0.4 1,149,561 + SM_b20925 0.34 +0.2 1,149,561 + SM_b20925 0.34 +0.2 1,149,634 + SM_b20925 0.40 -1.3 1,149,635 - SM_b20925 0.40 +1.5 1,149,635 - SM_b20925 0.40 -0.4 1,149,635 - SM_b20925 0.40 -0.6 1,149,637 + SM_b20925 0.41 -0.9 1,149,638 - SM_b20925 0.41 -0.3 1,149,779 + SM_b20925 0.53 -0.5 1,149,779 + SM_b20925 0.53 +0.7 1,149,779 + SM_b20925 0.53 -2.2 1,149,779 + SM_b20925 0.53 -0.4 1,149,780 - SM_b20925 0.53 -1.0 1,149,794 - SM_b20925 0.55 +0.1 1,149,815 + SM_b20925 0.57 -0.4 1,150,523 + SM_b20926 0.20 -0.1 1,150,554 + SM_b20926 0.26 +0.1 1,150,554 + SM_b20926 0.26 +0.4 1,150,554 + SM_b20926 0.26 +0.5 1,150,554 + SM_b20926 0.26 -0.5 1,150,554 + SM_b20926 0.26 -0.3 1,150,554 + SM_b20926 0.26 -1.4 1,150,554 + SM_b20926 0.26 +0.4 1,150,555 - SM_b20926 0.27 +0.1 1,150,555 - SM_b20926 0.27 +0.4 1,150,555 - SM_b20926 0.27 +1.7 1,150,555 - SM_b20926 0.27 +0.2 1,150,886 - -0.5 1,150,886 - -0.2 1,150,895 - -0.2 1,150,912 + +0.2 1,150,912 + -0.0 1,150,912 + +0.5 1,150,912 + -0.2 1,150,913 - -0.6 1,150,932 + +0.2 1,150,932 + +1.1 1,151,032 + SM_b20927 0.21 -0.7 1,151,032 + SM_b20927 0.21 +0.2 1,151,033 - SM_b20927 0.21 -1.4 1,151,197 - SM_b20927 0.55 -0.6 1,151,220 - SM_b20927 0.60 -0.2 1,151,220 - SM_b20927 0.60 +0.5
Or see this region's nucleotide sequence