Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20925

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20924 and SM_b21672 are separated by 32 nucleotidesSM_b21672 and SM_b20925 are separated by 100 nucleotidesSM_b20925 and SM_b20926 are separated by 121 nucleotidesSM_b20926 and SM_b20927 are separated by 8 nucleotides SM_b20924: SM_b20924 - alpha-L-arabinofuranosidase, at 1,147,361 to 1,148,881 _b20924 SM_b21672: SM_b21672 - hypothetical protein, at 1,148,914 to 1,149,081 _b21672 SM_b20925: SM_b20925 - hypothetical protein, at 1,149,182 to 1,150,300 _b20925 SM_b20926: SM_b20926 - hypothetical protein, at 1,150,422 to 1,150,922 _b20926 SM_b20927: SM_b20927 - hypothetical protein, at 1,150,931 to 1,151,413 _b20927 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -2 -1 0 1at 1148.187 kb on + strand, within SM_b20924at 1148.188 kb on - strand, within SM_b20924at 1148.224 kb on - strand, within SM_b20924at 1148.283 kb on + strand, within SM_b20924at 1148.283 kb on + strand, within SM_b20924at 1148.284 kb on - strand, within SM_b20924at 1148.300 kb on + strand, within SM_b20924at 1148.301 kb on - strand, within SM_b20924at 1148.409 kb on + strand, within SM_b20924at 1148.410 kb on - strand, within SM_b20924at 1148.439 kb on + strand, within SM_b20924at 1148.440 kb on - strand, within SM_b20924at 1148.440 kb on - strand, within SM_b20924at 1148.463 kb on + strand, within SM_b20924at 1148.463 kb on + strand, within SM_b20924at 1148.655 kb on + strand, within SM_b20924at 1148.655 kb on + strand, within SM_b20924at 1148.699 kb on - strand, within SM_b20924at 1148.699 kb on - strand, within SM_b20924at 1148.784 kb on + strandat 1148.821 kb on - strandat 1148.822 kb on + strandat 1148.848 kb on + strandat 1148.848 kb on + strandat 1148.849 kb on - strandat 1148.849 kb on - strandat 1148.849 kb on - strandat 1148.851 kb on - strandat 1148.851 kb on - strandat 1148.897 kb on - strandat 1148.897 kb on - strandat 1149.009 kb on + strand, within SM_b21672at 1149.079 kb on + strandat 1149.080 kb on - strandat 1149.088 kb on - strandat 1149.174 kb on + strandat 1149.175 kb on - strandat 1149.264 kb on + strandat 1149.265 kb on - strandat 1149.408 kb on + strand, within SM_b20925at 1149.409 kb on - strand, within SM_b20925at 1149.561 kb on + strand, within SM_b20925at 1149.561 kb on + strand, within SM_b20925at 1149.561 kb on + strand, within SM_b20925at 1149.634 kb on + strand, within SM_b20925at 1149.635 kb on - strand, within SM_b20925at 1149.635 kb on - strand, within SM_b20925at 1149.635 kb on - strand, within SM_b20925at 1149.637 kb on + strand, within SM_b20925at 1149.638 kb on - strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.779 kb on + strand, within SM_b20925at 1149.780 kb on - strand, within SM_b20925at 1149.794 kb on - strand, within SM_b20925at 1149.815 kb on + strand, within SM_b20925at 1150.523 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.554 kb on + strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.555 kb on - strand, within SM_b20926at 1150.886 kb on - strandat 1150.886 kb on - strandat 1150.895 kb on - strandat 1150.912 kb on + strandat 1150.912 kb on + strandat 1150.912 kb on + strandat 1150.912 kb on + strandat 1150.913 kb on - strandat 1150.932 kb on + strandat 1150.932 kb on + strandat 1151.032 kb on + strand, within SM_b20927at 1151.032 kb on + strand, within SM_b20927at 1151.033 kb on - strand, within SM_b20927at 1151.197 kb on - strand, within SM_b20927at 1151.220 kb on - strand, within SM_b20927at 1151.220 kb on - strand, within SM_b20927

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,148,187 + SM_b20924 0.54 +0.9
1,148,188 - SM_b20924 0.54 -0.2
1,148,224 - SM_b20924 0.57 +0.0
1,148,283 + SM_b20924 0.61 -0.2
1,148,283 + SM_b20924 0.61 -0.5
1,148,284 - SM_b20924 0.61 -0.1
1,148,300 + SM_b20924 0.62 +0.5
1,148,301 - SM_b20924 0.62 -0.8
1,148,409 + SM_b20924 0.69 +1.1
1,148,410 - SM_b20924 0.69 +0.1
1,148,439 + SM_b20924 0.71 +0.2
1,148,440 - SM_b20924 0.71 -0.4
1,148,440 - SM_b20924 0.71 +0.4
1,148,463 + SM_b20924 0.72 +0.5
1,148,463 + SM_b20924 0.72 +0.1
1,148,655 + SM_b20924 0.85 -0.1
1,148,655 + SM_b20924 0.85 -0.3
1,148,699 - SM_b20924 0.88 +0.4
1,148,699 - SM_b20924 0.88 -0.3
1,148,784 + +0.7
1,148,821 - +0.5
1,148,822 + +0.7
1,148,848 + +0.7
1,148,848 + -0.6
1,148,849 - -1.8
1,148,849 - -0.2
1,148,849 - +0.1
1,148,851 - -0.2
1,148,851 - +0.0
1,148,897 - -0.3
1,148,897 - -0.8
1,149,009 + SM_b21672 0.57 -0.1
1,149,079 + +0.9
1,149,080 - -0.9
1,149,088 - +0.9
1,149,174 + +0.5
1,149,175 - +0.7
1,149,264 + +0.4
1,149,265 - -1.1
1,149,408 + SM_b20925 0.20 -1.0
1,149,409 - SM_b20925 0.20 -1.5
1,149,561 + SM_b20925 0.34 +0.4
1,149,561 + SM_b20925 0.34 +0.2
1,149,561 + SM_b20925 0.34 +0.2
1,149,634 + SM_b20925 0.40 -1.3
1,149,635 - SM_b20925 0.40 +1.5
1,149,635 - SM_b20925 0.40 -0.4
1,149,635 - SM_b20925 0.40 -0.6
1,149,637 + SM_b20925 0.41 -0.9
1,149,638 - SM_b20925 0.41 -0.3
1,149,779 + SM_b20925 0.53 -0.5
1,149,779 + SM_b20925 0.53 +0.7
1,149,779 + SM_b20925 0.53 -2.2
1,149,779 + SM_b20925 0.53 -0.4
1,149,780 - SM_b20925 0.53 -1.0
1,149,794 - SM_b20925 0.55 +0.1
1,149,815 + SM_b20925 0.57 -0.4
1,150,523 + SM_b20926 0.20 -0.1
1,150,554 + SM_b20926 0.26 +0.1
1,150,554 + SM_b20926 0.26 +0.4
1,150,554 + SM_b20926 0.26 +0.5
1,150,554 + SM_b20926 0.26 -0.5
1,150,554 + SM_b20926 0.26 -0.3
1,150,554 + SM_b20926 0.26 -1.4
1,150,554 + SM_b20926 0.26 +0.4
1,150,555 - SM_b20926 0.27 +0.1
1,150,555 - SM_b20926 0.27 +0.4
1,150,555 - SM_b20926 0.27 +1.7
1,150,555 - SM_b20926 0.27 +0.2
1,150,886 - -0.5
1,150,886 - -0.2
1,150,895 - -0.2
1,150,912 + +0.2
1,150,912 + -0.0
1,150,912 + +0.5
1,150,912 + -0.2
1,150,913 - -0.6
1,150,932 + +0.2
1,150,932 + +1.1
1,151,032 + SM_b20927 0.21 -0.7
1,151,032 + SM_b20927 0.21 +0.2
1,151,033 - SM_b20927 0.21 -1.4
1,151,197 - SM_b20927 0.55 -0.6
1,151,220 - SM_b20927 0.60 -0.2
1,151,220 - SM_b20927 0.60 +0.5

Or see this region's nucleotide sequence