Strain Fitness in Sinorhizobium meliloti 1021 around SMc04162

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04451 and SMc04161 are separated by 77 nucleotidesSMc04161 and SMc04162 are separated by 31 nucleotidesSMc04162 and SMc04163 are separated by 98 nucleotides SMc04451: SMc04451 - chloramphenicol phosphotransferase, at 2,150,584 to 2,151,246 SMc04451 SMc04161: SMc04161 - hypothetical protein, at 2,151,324 to 2,151,794 SMc04161 SMc04162: SMc04162 - transcriptional regulator, at 2,151,826 to 2,152,155 SMc04162 SMc04163: SMc04163 - transcriptional regulator, at 2,152,254 to 2,153,150 SMc04163 Position (kb) 2151 2152 2153Strain fitness (log2 ratio) -2 -1 0 1 2at 2151.028 kb on + strand, within SMc04451at 2151.029 kb on - strand, within SMc04451at 2151.106 kb on + strand, within SMc04451at 2151.106 kb on + strand, within SMc04451at 2151.107 kb on - strand, within SMc04451at 2151.107 kb on - strand, within SMc04451at 2151.107 kb on - strand, within SMc04451at 2151.244 kb on + strandat 2151.344 kb on + strandat 2151.344 kb on + strandat 2151.346 kb on + strandat 2151.347 kb on - strandat 2151.746 kb on + strand, within SMc04161at 2151.746 kb on + strand, within SMc04161at 2151.746 kb on + strand, within SMc04161at 2151.747 kb on - strand, within SMc04161at 2151.747 kb on - strand, within SMc04161at 2151.827 kb on + strandat 2151.828 kb on - strandat 2152.128 kb on + strandat 2152.129 kb on - strandat 2152.177 kb on + strandat 2152.255 kb on + strandat 2152.255 kb on + strandat 2152.357 kb on + strand, within SMc04163at 2152.357 kb on + strand, within SMc04163at 2152.357 kb on + strand, within SMc04163at 2152.358 kb on - strand, within SMc04163at 2152.358 kb on - strand, within SMc04163at 2152.358 kb on - strand, within SMc04163at 2152.478 kb on + strand, within SMc04163at 2152.478 kb on + strand, within SMc04163at 2152.479 kb on - strand, within SMc04163at 2152.481 kb on - strand, within SMc04163at 2152.481 kb on - strand, within SMc04163at 2152.481 kb on - strand, within SMc04163at 2152.775 kb on - strand, within SMc04163at 2152.798 kb on - strand, within SMc04163at 2152.798 kb on - strand, within SMc04163at 2152.918 kb on + strand, within SMc04163at 2152.919 kb on - strand, within SMc04163at 2153.041 kb on + strand, within SMc04163at 2153.041 kb on + strand, within SMc04163

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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2,151,028 + SMc04451 0.67 -0.0
2,151,029 - SMc04451 0.67 -0.4
2,151,106 + SMc04451 0.79 -0.6
2,151,106 + SMc04451 0.79 +0.5
2,151,107 - SMc04451 0.79 +0.2
2,151,107 - SMc04451 0.79 +0.1
2,151,107 - SMc04451 0.79 +0.3
2,151,244 + -0.3
2,151,344 + -1.8
2,151,344 + -0.2
2,151,346 + -0.8
2,151,347 - +0.1
2,151,746 + SMc04161 0.90 -0.8
2,151,746 + SMc04161 0.90 -0.4
2,151,746 + SMc04161 0.90 -2.2
2,151,747 - SMc04161 0.90 -0.8
2,151,747 - SMc04161 0.90 -0.6
2,151,827 + +0.1
2,151,828 - +0.1
2,152,128 + +0.6
2,152,129 - -0.5
2,152,177 + +1.8
2,152,255 + +0.4
2,152,255 + +0.5
2,152,357 + SMc04163 0.11 +0.0
2,152,357 + SMc04163 0.11 +0.1
2,152,357 + SMc04163 0.11 +0.5
2,152,358 - SMc04163 0.12 +0.1
2,152,358 - SMc04163 0.12 -0.1
2,152,358 - SMc04163 0.12 -1.8
2,152,478 + SMc04163 0.25 -0.5
2,152,478 + SMc04163 0.25 +0.8
2,152,479 - SMc04163 0.25 -0.6
2,152,481 - SMc04163 0.25 -0.8
2,152,481 - SMc04163 0.25 -0.2
2,152,481 - SMc04163 0.25 +0.2
2,152,775 - SMc04163 0.58 -1.3
2,152,798 - SMc04163 0.61 +0.7
2,152,798 - SMc04163 0.61 +0.6
2,152,918 + SMc04163 0.74 -0.8
2,152,919 - SMc04163 0.74 +0.2
2,153,041 + SMc04163 0.88 -0.8
2,153,041 + SMc04163 0.88 -0.5

Or see this region's nucleotide sequence