Strain Fitness in Sinorhizobium meliloti 1021 around SMc03935

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03933 and SMc03934 are separated by 263 nucleotidesSMc03934 and SMc03935 are separated by 187 nucleotidesSMc03935 and SMc03936 are separated by 239 nucleotidesSMc03936 and SMc03937 are separated by 107 nucleotides SMc03933: SMc03933 - sarcosine oxidase subunit B protein, at 3,083,686 to 3,084,939 SMc03933 SMc03934: SMc03934 - 30S ribosomal protein S21, at 3,085,203 to 3,085,457 SMc03934 SMc03935: SMc03935 - hypothetical protein, at 3,085,645 to 3,086,532 SMc03935 SMc03936: SMc03936 - signal peptide protein, at 3,086,772 to 3,087,245 SMc03936 SMc03937: SMc03937 - adenylate/guanylate cyclase, at 3,087,353 to 3,088,624 SMc03937 Position (kb) 3085 3086 3087Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3084.662 kb on + strand, within SMc03933at 3084.662 kb on + strand, within SMc03933at 3084.663 kb on - strand, within SMc03933at 3084.683 kb on + strand, within SMc03933at 3084.684 kb on - strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.689 kb on + strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.690 kb on - strand, within SMc03933at 3084.792 kb on - strand, within SMc03933at 3084.792 kb on - strand, within SMc03933at 3084.794 kb on + strand, within SMc03933at 3084.794 kb on + strand, within SMc03933at 3084.794 kb on + strand, within SMc03933at 3084.795 kb on - strand, within SMc03933at 3084.795 kb on - strand, within SMc03933at 3084.826 kb on + strandat 3084.826 kb on + strandat 3084.827 kb on - strandat 3084.842 kb on + strandat 3084.843 kb on - strandat 3084.843 kb on - strandat 3084.929 kb on + strandat 3084.930 kb on - strandat 3084.930 kb on - strandat 3084.930 kb on - strandat 3084.948 kb on + strandat 3084.948 kb on + strandat 3084.948 kb on + strandat 3084.948 kb on + strandat 3084.949 kb on - strandat 3084.949 kb on - strandat 3084.960 kb on + strandat 3085.550 kb on - strandat 3085.885 kb on + strand, within SMc03935at 3085.978 kb on + strand, within SMc03935at 3085.987 kb on + strand, within SMc03935at 3085.987 kb on + strand, within SMc03935at 3085.987 kb on + strand, within SMc03935at 3085.987 kb on + strand, within SMc03935at 3085.988 kb on - strand, within SMc03935at 3085.988 kb on - strand, within SMc03935at 3085.988 kb on - strand, within SMc03935at 3086.047 kb on + strand, within SMc03935at 3086.048 kb on - strand, within SMc03935at 3086.077 kb on + strand, within SMc03935at 3086.078 kb on - strand, within SMc03935at 3086.089 kb on + strand, within SMc03935at 3086.090 kb on - strand, within SMc03935at 3086.090 kb on - strand, within SMc03935at 3086.092 kb on - strand, within SMc03935at 3086.111 kb on - strand, within SMc03935at 3086.293 kb on + strand, within SMc03935at 3086.294 kb on - strand, within SMc03935at 3086.295 kb on + strand, within SMc03935at 3086.296 kb on - strand, within SMc03935at 3086.314 kb on + strand, within SMc03935at 3086.314 kb on + strand, within SMc03935at 3086.314 kb on + strand, within SMc03935at 3086.314 kb on + strand, within SMc03935at 3086.416 kb on + strand, within SMc03935at 3086.455 kb on + strandat 3086.486 kb on - strandat 3086.561 kb on + strandat 3086.561 kb on + strandat 3086.562 kb on - strandat 3086.562 kb on - strandat 3086.792 kb on + strandat 3086.841 kb on + strand, within SMc03936at 3086.841 kb on + strand, within SMc03936at 3086.841 kb on + strand, within SMc03936at 3086.841 kb on + strand, within SMc03936at 3086.842 kb on - strand, within SMc03936at 3086.891 kb on + strand, within SMc03936at 3086.892 kb on - strand, within SMc03936at 3086.892 kb on - strand, within SMc03936at 3086.919 kb on + strand, within SMc03936at 3086.919 kb on + strand, within SMc03936at 3086.919 kb on + strand, within SMc03936at 3086.919 kb on + strand, within SMc03936at 3086.919 kb on + strand, within SMc03936at 3086.919 kb on + strand, within SMc03936at 3086.920 kb on - strand, within SMc03936at 3086.920 kb on - strand, within SMc03936at 3086.920 kb on - strand, within SMc03936at 3086.920 kb on - strand, within SMc03936at 3086.920 kb on - strand, within SMc03936at 3086.958 kb on + strand, within SMc03936at 3086.958 kb on + strand, within SMc03936at 3086.958 kb on + strand, within SMc03936at 3086.959 kb on - strand, within SMc03936at 3086.959 kb on - strand, within SMc03936at 3086.959 kb on - strand, within SMc03936at 3087.380 kb on - strandat 3087.525 kb on + strand, within SMc03937

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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3,084,662 + SMc03933 0.78 -0.4
3,084,662 + SMc03933 0.78 -0.3
3,084,663 - SMc03933 0.78 -0.8
3,084,683 + SMc03933 0.80 +0.1
3,084,684 - SMc03933 0.80 -1.0
3,084,689 + SMc03933 0.80 -2.4
3,084,689 + SMc03933 0.80 -0.9
3,084,689 + SMc03933 0.80 -0.5
3,084,689 + SMc03933 0.80 -0.8
3,084,690 - SMc03933 0.80 +0.9
3,084,690 - SMc03933 0.80 +0.0
3,084,690 - SMc03933 0.80 +0.1
3,084,690 - SMc03933 0.80 +0.2
3,084,792 - SMc03933 0.88 -0.6
3,084,792 - SMc03933 0.88 -0.7
3,084,794 + SMc03933 0.88 -0.2
3,084,794 + SMc03933 0.88 +1.2
3,084,794 + SMc03933 0.88 -0.1
3,084,795 - SMc03933 0.88 -0.3
3,084,795 - SMc03933 0.88 -1.7
3,084,826 + -0.0
3,084,826 + +0.4
3,084,827 - -1.0
3,084,842 + +0.3
3,084,843 - -0.4
3,084,843 - +0.3
3,084,929 + -0.2
3,084,930 - -2.0
3,084,930 - -0.5
3,084,930 - +0.1
3,084,948 + -0.3
3,084,948 + +0.7
3,084,948 + -0.6
3,084,948 + +0.1
3,084,949 - -0.3
3,084,949 - -0.1
3,084,960 + +0.0
3,085,550 - -1.3
3,085,885 + SMc03935 0.27 -1.7
3,085,978 + SMc03935 0.38 +2.9
3,085,987 + SMc03935 0.39 +0.9
3,085,987 + SMc03935 0.39 -1.5
3,085,987 + SMc03935 0.39 -1.1
3,085,987 + SMc03935 0.39 -2.0
3,085,988 - SMc03935 0.39 -1.5
3,085,988 - SMc03935 0.39 -0.7
3,085,988 - SMc03935 0.39 -1.1
3,086,047 + SMc03935 0.45 -1.1
3,086,048 - SMc03935 0.45 -2.2
3,086,077 + SMc03935 0.49 +1.9
3,086,078 - SMc03935 0.49 -0.9
3,086,089 + SMc03935 0.50 +0.6
3,086,090 - SMc03935 0.50 -0.7
3,086,090 - SMc03935 0.50 +0.9
3,086,092 - SMc03935 0.50 -0.7
3,086,111 - SMc03935 0.52 -1.6
3,086,293 + SMc03935 0.73 -4.0
3,086,294 - SMc03935 0.73 -1.3
3,086,295 + SMc03935 0.73 -0.4
3,086,296 - SMc03935 0.73 -2.3
3,086,314 + SMc03935 0.75 -0.4
3,086,314 + SMc03935 0.75 -0.6
3,086,314 + SMc03935 0.75 +1.9
3,086,314 + SMc03935 0.75 -0.4
3,086,416 + SMc03935 0.87 +0.3
3,086,455 + -0.9
3,086,486 - -0.6
3,086,561 + +0.0
3,086,561 + +0.2
3,086,562 - +0.1
3,086,562 - +0.6
3,086,792 + +0.3
3,086,841 + SMc03936 0.15 -0.2
3,086,841 + SMc03936 0.15 -0.3
3,086,841 + SMc03936 0.15 -0.2
3,086,841 + SMc03936 0.15 +1.0
3,086,842 - SMc03936 0.15 -1.3
3,086,891 + SMc03936 0.25 -0.1
3,086,892 - SMc03936 0.25 -0.6
3,086,892 - SMc03936 0.25 -0.1
3,086,919 + SMc03936 0.31 -0.2
3,086,919 + SMc03936 0.31 -0.3
3,086,919 + SMc03936 0.31 +0.2
3,086,919 + SMc03936 0.31 -0.4
3,086,919 + SMc03936 0.31 -0.6
3,086,919 + SMc03936 0.31 -0.0
3,086,920 - SMc03936 0.31 +0.2
3,086,920 - SMc03936 0.31 +1.6
3,086,920 - SMc03936 0.31 +0.1
3,086,920 - SMc03936 0.31 +0.2
3,086,920 - SMc03936 0.31 -0.4
3,086,958 + SMc03936 0.39 -0.6
3,086,958 + SMc03936 0.39 +0.0
3,086,958 + SMc03936 0.39 +0.2
3,086,959 - SMc03936 0.39 +0.2
3,086,959 - SMc03936 0.39 -0.1
3,086,959 - SMc03936 0.39 +0.1
3,087,380 - +0.7
3,087,525 + SMc03937 0.14 -0.1

Or see this region's nucleotide sequence