Strain Fitness in Sinorhizobium meliloti 1021 around SMc02894

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02893 and SMc02894 are separated by 13 nucleotidesSMc02894 and SMc02895 are separated by 203 nucleotides SMc02893: SMc02893 - transcriptional regulator, at 250,422 to 251,348 SMc02893 SMc02894: SMc02894 - hypothetical protein, at 251,362 to 251,631 SMc02894 SMc02895: SMc02895 - hypothetical protein, at 251,835 to 252,779 SMc02895 Position (kb) 251 252Strain fitness (log2 ratio) -1 0 1 2at 250.411 kb on - strandat 250.411 kb on - strandat 250.411 kb on - strandat 251.054 kb on + strand, within SMc02893at 251.054 kb on + strand, within SMc02893at 251.055 kb on - strand, within SMc02893at 251.091 kb on - strand, within SMc02893at 251.099 kb on - strand, within SMc02893at 251.470 kb on - strand, within SMc02894at 251.521 kb on - strand, within SMc02894at 251.537 kb on + strand, within SMc02894at 251.609 kb on + strandat 251.610 kb on - strandat 251.719 kb on + strandat 251.719 kb on + strandat 251.720 kb on - strandat 251.786 kb on + strandat 251.787 kb on - strandat 251.787 kb on - strandat 251.806 kb on - strandat 251.860 kb on + strandat 251.861 kb on - strandat 252.039 kb on + strand, within SMc02895at 252.040 kb on - strand, within SMc02895at 252.163 kb on + strand, within SMc02895at 252.505 kb on - strand, within SMc02895at 252.505 kb on - strand, within SMc02895

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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250,411 - -0.6
250,411 - -0.7
250,411 - -0.4
251,054 + SMc02893 0.68 +0.7
251,054 + SMc02893 0.68 -0.0
251,055 - SMc02893 0.68 -1.0
251,091 - SMc02893 0.72 -0.0
251,099 - SMc02893 0.73 +0.2
251,470 - SMc02894 0.40 +0.8
251,521 - SMc02894 0.59 +0.1
251,537 + SMc02894 0.65 +1.9
251,609 + -0.1
251,610 - -0.6
251,719 + +0.1
251,719 + +0.2
251,720 - -0.7
251,786 + +0.1
251,787 - -0.9
251,787 - -0.1
251,806 - -0.2
251,860 + -0.4
251,861 - +0.1
252,039 + SMc02895 0.22 +0.2
252,040 - SMc02895 0.22 +0.0
252,163 + SMc02895 0.35 -0.4
252,505 - SMc02895 0.71 -0.2
252,505 - SMc02895 0.71 -0.2

Or see this region's nucleotide sequence