Strain Fitness in Sinorhizobium meliloti 1021 around SMc02552

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02553 and SMc02552 are separated by 186 nucleotidesSMc02552 and SMc02551 are separated by 414 nucleotides SMc02553: SMc02553 - hypothetical protein, at 1,207,628 to 1,208,458 SMc02553 SMc02552: SMc02552 - hypothetical protein, at 1,208,645 to 1,208,794 SMc02552 SMc02551: SMc02551 - cysteinyl-tRNA synthetase, at 1,209,209 to 1,210,609 SMc02551 Position (kb) 1208 1209Strain fitness (log2 ratio) -1 0 1at 1207.662 kb on - strandat 1207.662 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.992 kb on + strand, within SMc02553at 1207.993 kb on - strand, within SMc02553at 1207.993 kb on - strand, within SMc02553at 1208.164 kb on + strand, within SMc02553at 1208.309 kb on + strand, within SMc02553at 1208.391 kb on + strandat 1208.391 kb on + strandat 1208.646 kb on + strandat 1208.646 kb on + strandat 1208.647 kb on - strandat 1208.832 kb on + strandat 1208.833 kb on - strandat 1208.900 kb on - strandat 1209.067 kb on + strandat 1209.076 kb on + strandat 1209.132 kb on + strandat 1209.132 kb on + strandat 1209.132 kb on + strandat 1209.171 kb on + strandat 1209.171 kb on + strandat 1209.171 kb on + strandat 1209.171 kb on + strandat 1209.173 kb on + strandat 1209.173 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,207,662 - -0.5
1,207,662 - +0.1
1,207,665 - +0.3
1,207,665 - -0.0
1,207,665 - -0.2
1,207,665 - +0.6
1,207,665 - +0.7
1,207,992 + SMc02553 0.44 -0.9
1,207,993 - SMc02553 0.44 -0.9
1,207,993 - SMc02553 0.44 +0.2
1,208,164 + SMc02553 0.65 -0.4
1,208,309 + SMc02553 0.82 -1.0
1,208,391 + -0.3
1,208,391 + +0.0
1,208,646 + +0.1
1,208,646 + -0.1
1,208,647 - -0.5
1,208,832 + -0.2
1,208,833 - -0.2
1,208,900 - -0.2
1,209,067 + +0.2
1,209,076 + +0.2
1,209,132 + +1.4
1,209,132 + -0.7
1,209,132 + -1.1
1,209,171 + -0.6
1,209,171 + +0.2
1,209,171 + -0.2
1,209,171 + +0.9
1,209,173 + -0.8
1,209,173 + +0.7

Or see this region's nucleotide sequence