Strain Fitness in Sinorhizobium meliloti 1021 around SMc02081

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02082 and SMc02081 are separated by 224 nucleotidesSMc02081 and SMc02080 are separated by 313 nucleotides SMc02082: SMc02082 - outer membrane secretion protein, at 1,629,672 to 1,631,042 SMc02082 SMc02081: SMc02081 - hypothetical protein, at 1,631,267 to 1,632,022 SMc02081 SMc02080: SMc02080 - valyl-tRNA synthetase, at 1,632,336 to 1,635,179 SMc02080 Position (kb) 1631 1632 1633Strain fitness (log2 ratio) -1 0 1at 1631.041 kb on - strandat 1631.156 kb on + strandat 1632.025 kb on + strandat 1632.160 kb on + strandat 1632.223 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,631,041 - -0.3
1,631,156 + -0.7
1,632,025 + -0.7
1,632,160 + -0.0
1,632,223 + +0.1

Or see this region's nucleotide sequence