Strain Fitness in Sinorhizobium meliloti 1021 around SMa2363

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2361 and SMa2363 are separated by 11 nucleotidesSMa2363 and SMa2365 overlap by 4 nucleotides SMa2361: SMa2361 - hypothetical protein, at 1,331,764 to 1,332,750 SMa2361 SMa2363: SMa2363 - amidase, at 1,332,762 to 1,334,177 SMa2363 SMa2365: SMa2365 - ABC transporter ATP-binding protein, at 1,334,174 to 1,335,700 SMa2365 Position (kb) 1332 1333 1334 1335Strain fitness (log2 ratio) -2 -1 0 1at 1331.962 kb on + strand, within SMa2361at 1331.963 kb on - strand, within SMa2361at 1331.963 kb on - strand, within SMa2361at 1332.017 kb on - strand, within SMa2361at 1332.055 kb on + strand, within SMa2361at 1332.056 kb on - strand, within SMa2361at 1332.056 kb on - strand, within SMa2361at 1332.484 kb on + strand, within SMa2361at 1332.595 kb on + strand, within SMa2361at 1332.595 kb on + strand, within SMa2361at 1332.595 kb on + strand, within SMa2361at 1332.596 kb on - strand, within SMa2361at 1332.596 kb on - strand, within SMa2361at 1332.640 kb on + strand, within SMa2361at 1332.641 kb on - strand, within SMa2361at 1332.641 kb on - strand, within SMa2361at 1332.744 kb on + strandat 1332.745 kb on - strandat 1332.745 kb on - strandat 1332.749 kb on - strandat 1333.261 kb on + strand, within SMa2363at 1333.519 kb on + strand, within SMa2363at 1333.519 kb on + strand, within SMa2363at 1333.519 kb on + strand, within SMa2363at 1333.773 kb on - strand, within SMa2363at 1333.871 kb on - strand, within SMa2363at 1333.877 kb on + strand, within SMa2363at 1333.878 kb on - strand, within SMa2363at 1333.878 kb on - strand, within SMa2363at 1334.336 kb on + strand, within SMa2365at 1334.337 kb on - strand, within SMa2365at 1334.358 kb on + strand, within SMa2365at 1334.358 kb on + strand, within SMa2365at 1334.359 kb on - strand, within SMa2365at 1334.418 kb on + strand, within SMa2365at 1334.419 kb on - strand, within SMa2365at 1334.419 kb on - strand, within SMa2365at 1334.419 kb on - strand, within SMa2365at 1334.643 kb on - strand, within SMa2365at 1334.656 kb on + strand, within SMa2365at 1334.656 kb on + strand, within SMa2365at 1334.657 kb on - strand, within SMa2365at 1335.034 kb on + strand, within SMa2365

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,331,962 + SMa2361 0.20 +0.1
1,331,963 - SMa2361 0.20 -0.1
1,331,963 - SMa2361 0.20 -0.0
1,332,017 - SMa2361 0.26 -0.3
1,332,055 + SMa2361 0.29 -0.2
1,332,056 - SMa2361 0.30 +0.6
1,332,056 - SMa2361 0.30 -0.0
1,332,484 + SMa2361 0.73 -0.7
1,332,595 + SMa2361 0.84 -0.3
1,332,595 + SMa2361 0.84 +0.1
1,332,595 + SMa2361 0.84 +0.5
1,332,596 - SMa2361 0.84 -0.2
1,332,596 - SMa2361 0.84 -0.1
1,332,640 + SMa2361 0.89 -0.6
1,332,641 - SMa2361 0.89 -0.0
1,332,641 - SMa2361 0.89 -0.6
1,332,744 + +0.3
1,332,745 - -0.9
1,332,745 - -2.1
1,332,749 - +0.3
1,333,261 + SMa2363 0.35 +0.2
1,333,519 + SMa2363 0.53 +0.3
1,333,519 + SMa2363 0.53 -0.3
1,333,519 + SMa2363 0.53 +0.7
1,333,773 - SMa2363 0.71 +0.1
1,333,871 - SMa2363 0.78 -0.1
1,333,877 + SMa2363 0.79 +0.3
1,333,878 - SMa2363 0.79 +0.8
1,333,878 - SMa2363 0.79 +0.5
1,334,336 + SMa2365 0.11 +0.5
1,334,337 - SMa2365 0.11 +0.3
1,334,358 + SMa2365 0.12 -0.3
1,334,358 + SMa2365 0.12 -0.1
1,334,359 - SMa2365 0.12 -0.9
1,334,418 + SMa2365 0.16 -1.2
1,334,419 - SMa2365 0.16 +0.9
1,334,419 - SMa2365 0.16 +0.5
1,334,419 - SMa2365 0.16 -0.1
1,334,643 - SMa2365 0.31 -1.3
1,334,656 + SMa2365 0.32 -1.0
1,334,656 + SMa2365 0.32 +0.3
1,334,657 - SMa2365 0.32 +0.3
1,335,034 + SMa2365 0.56 +0.9

Or see this region's nucleotide sequence