Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0829 and SMa0830 are separated by 53 nucleotides SMa0830 and SMa0831 are separated by 495 nucleotides
SMa0829: SMa0829 - NifK nitrogenase molybdenum-iron protein beta chain, at 456,142 to 457,683
SMa0829
SMa0830: SMa0830 - nitrogenase molybdenum-cofactor biosynthesis protein NifE, at 457,737 to 459,167
SMa0830
SMa0831: SMa0831 - NifX iron-molybdenum cluster-binding protein, at 459,663 to 460,163
SMa0831
Position (kb)
457
458
459
460 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 456.745 kb on - strand, within SMa0829 at 456.789 kb on - strand, within SMa0829 at 456.886 kb on + strand, within SMa0829 at 456.922 kb on - strand, within SMa0829 at 456.949 kb on + strand, within SMa0829 at 456.950 kb on - strand, within SMa0829 at 456.950 kb on - strand, within SMa0829 at 457.021 kb on + strand, within SMa0829 at 457.026 kb on + strand, within SMa0829 at 457.046 kb on - strand, within SMa0829 at 457.084 kb on + strand, within SMa0829 at 457.085 kb on - strand, within SMa0829 at 457.128 kb on - strand, within SMa0829 at 457.231 kb on + strand, within SMa0829 at 457.259 kb on + strand, within SMa0829 at 457.471 kb on + strand, within SMa0829 at 457.660 kb on + strand at 457.661 kb on - strand at 457.666 kb on + strand at 457.667 kb on - strand at 457.667 kb on - strand at 457.667 kb on - strand at 457.667 kb on - strand at 457.674 kb on + strand at 457.674 kb on + strand at 457.812 kb on - strand at 458.052 kb on - strand, within SMa0830 at 458.158 kb on + strand, within SMa0830 at 458.158 kb on + strand, within SMa0830 at 458.159 kb on - strand, within SMa0830 at 458.330 kb on + strand, within SMa0830 at 458.471 kb on + strand, within SMa0830 at 458.471 kb on + strand, within SMa0830 at 458.608 kb on + strand, within SMa0830 at 458.609 kb on - strand, within SMa0830 at 458.811 kb on - strand, within SMa0830 at 458.871 kb on - strand, within SMa0830 at 458.921 kb on + strand, within SMa0830 at 458.921 kb on + strand, within SMa0830 at 459.170 kb on + strand at 459.170 kb on + strand at 459.171 kb on - strand at 459.424 kb on - strand at 459.438 kb on + strand at 459.456 kb on + strand at 459.633 kb on - strand at 459.765 kb on - strand, within SMa0831 at 459.814 kb on - strand, within SMa0831 at 459.952 kb on + strand, within SMa0831 at 459.953 kb on - strand, within SMa0831 at 459.953 kb on - strand, within SMa0831
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 456,745 - SMa0829 0.39 -1.2 456,789 - SMa0829 0.42 +1.2 456,886 + SMa0829 0.48 -1.0 456,922 - SMa0829 0.51 -0.1 456,949 + SMa0829 0.52 -0.2 456,950 - SMa0829 0.52 +0.0 456,950 - SMa0829 0.52 +1.0 457,021 + SMa0829 0.57 +0.4 457,026 + SMa0829 0.57 -0.8 457,046 - SMa0829 0.59 +0.3 457,084 + SMa0829 0.61 +0.0 457,085 - SMa0829 0.61 -1.7 457,128 - SMa0829 0.64 -2.3 457,231 + SMa0829 0.71 -2.0 457,259 + SMa0829 0.72 +0.4 457,471 + SMa0829 0.86 -0.7 457,660 + +0.6 457,661 - -0.5 457,666 + +0.3 457,667 - +1.9 457,667 - -0.4 457,667 - -0.9 457,667 - +0.9 457,674 + +0.5 457,674 + -0.0 457,812 - -0.9 458,052 - SMa0830 0.22 -0.8 458,158 + SMa0830 0.29 -0.4 458,158 + SMa0830 0.29 +0.7 458,159 - SMa0830 0.29 -1.8 458,330 + SMa0830 0.41 +0.9 458,471 + SMa0830 0.51 -1.6 458,471 + SMa0830 0.51 -2.3 458,608 + SMa0830 0.61 +0.7 458,609 - SMa0830 0.61 -0.1 458,811 - SMa0830 0.75 +0.3 458,871 - SMa0830 0.79 +0.7 458,921 + SMa0830 0.83 +1.0 458,921 + SMa0830 0.83 +0.3 459,170 + -1.3 459,170 + -0.7 459,171 - -0.1 459,424 - -0.1 459,438 + -0.8 459,456 + +0.7 459,633 - +1.6 459,765 - SMa0831 0.20 -0.6 459,814 - SMa0831 0.30 -0.0 459,952 + SMa0831 0.58 -1.0 459,953 - SMa0831 0.58 -0.7 459,953 - SMa0831 0.58 -0.1
Or see this region's nucleotide sequence