Strain Fitness in Sinorhizobium meliloti 1021 around SMa0830

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0829 and SMa0830 are separated by 53 nucleotidesSMa0830 and SMa0831 are separated by 495 nucleotides SMa0829: SMa0829 - NifK nitrogenase molybdenum-iron protein beta chain, at 456,142 to 457,683 SMa0829 SMa0830: SMa0830 - nitrogenase molybdenum-cofactor biosynthesis protein NifE, at 457,737 to 459,167 SMa0830 SMa0831: SMa0831 - NifX iron-molybdenum cluster-binding protein, at 459,663 to 460,163 SMa0831 Position (kb) 457 458 459 460Strain fitness (log2 ratio) -2 -1 0 1 2at 456.745 kb on - strand, within SMa0829at 456.789 kb on - strand, within SMa0829at 456.886 kb on + strand, within SMa0829at 456.922 kb on - strand, within SMa0829at 456.949 kb on + strand, within SMa0829at 456.950 kb on - strand, within SMa0829at 456.950 kb on - strand, within SMa0829at 457.021 kb on + strand, within SMa0829at 457.026 kb on + strand, within SMa0829at 457.046 kb on - strand, within SMa0829at 457.084 kb on + strand, within SMa0829at 457.085 kb on - strand, within SMa0829at 457.128 kb on - strand, within SMa0829at 457.231 kb on + strand, within SMa0829at 457.259 kb on + strand, within SMa0829at 457.471 kb on + strand, within SMa0829at 457.660 kb on + strandat 457.661 kb on - strandat 457.666 kb on + strandat 457.667 kb on - strandat 457.667 kb on - strandat 457.667 kb on - strandat 457.667 kb on - strandat 457.674 kb on + strandat 457.674 kb on + strandat 457.812 kb on - strandat 458.052 kb on - strand, within SMa0830at 458.158 kb on + strand, within SMa0830at 458.158 kb on + strand, within SMa0830at 458.159 kb on - strand, within SMa0830at 458.330 kb on + strand, within SMa0830at 458.471 kb on + strand, within SMa0830at 458.471 kb on + strand, within SMa0830at 458.608 kb on + strand, within SMa0830at 458.609 kb on - strand, within SMa0830at 458.811 kb on - strand, within SMa0830at 458.871 kb on - strand, within SMa0830at 458.921 kb on + strand, within SMa0830at 458.921 kb on + strand, within SMa0830at 459.170 kb on + strandat 459.170 kb on + strandat 459.171 kb on - strandat 459.424 kb on - strandat 459.438 kb on + strandat 459.456 kb on + strandat 459.633 kb on - strandat 459.765 kb on - strand, within SMa0831at 459.814 kb on - strand, within SMa0831at 459.952 kb on + strand, within SMa0831at 459.953 kb on - strand, within SMa0831at 459.953 kb on - strand, within SMa0831

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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456,745 - SMa0829 0.39 -1.2
456,789 - SMa0829 0.42 +1.2
456,886 + SMa0829 0.48 -1.0
456,922 - SMa0829 0.51 -0.1
456,949 + SMa0829 0.52 -0.2
456,950 - SMa0829 0.52 +0.0
456,950 - SMa0829 0.52 +1.0
457,021 + SMa0829 0.57 +0.4
457,026 + SMa0829 0.57 -0.8
457,046 - SMa0829 0.59 +0.3
457,084 + SMa0829 0.61 +0.0
457,085 - SMa0829 0.61 -1.7
457,128 - SMa0829 0.64 -2.3
457,231 + SMa0829 0.71 -2.0
457,259 + SMa0829 0.72 +0.4
457,471 + SMa0829 0.86 -0.7
457,660 + +0.6
457,661 - -0.5
457,666 + +0.3
457,667 - +1.9
457,667 - -0.4
457,667 - -0.9
457,667 - +0.9
457,674 + +0.5
457,674 + -0.0
457,812 - -0.9
458,052 - SMa0830 0.22 -0.8
458,158 + SMa0830 0.29 -0.4
458,158 + SMa0830 0.29 +0.7
458,159 - SMa0830 0.29 -1.8
458,330 + SMa0830 0.41 +0.9
458,471 + SMa0830 0.51 -1.6
458,471 + SMa0830 0.51 -2.3
458,608 + SMa0830 0.61 +0.7
458,609 - SMa0830 0.61 -0.1
458,811 - SMa0830 0.75 +0.3
458,871 - SMa0830 0.79 +0.7
458,921 + SMa0830 0.83 +1.0
458,921 + SMa0830 0.83 +0.3
459,170 + -1.3
459,170 + -0.7
459,171 - -0.1
459,424 - -0.1
459,438 + -0.8
459,456 + +0.7
459,633 - +1.6
459,765 - SMa0831 0.20 -0.6
459,814 - SMa0831 0.30 -0.0
459,952 + SMa0831 0.58 -1.0
459,953 - SMa0831 0.58 -0.7
459,953 - SMa0831 0.58 -0.1

Or see this region's nucleotide sequence