Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0516 and SMa0518 overlap by 4 nucleotides SMa0518 and SMa0520 are separated by 358 nucleotides SMa0520 and SMa0522 are separated by 128 nucleotides SMa0522 and SMa0523 overlap by 20 nucleotides
SMa0516: SMa0516 - hypothetical protein, at 279,118 to 280,005
SMa0516
SMa0518: SMa0518 - hypothetical protein, at 280,002 to 280,334
SMa0518
SMa0520: SMa0520 - RpiR family transcriptional regulator, at 280,693 to 281,535
SMa0520
SMa0522: SMa0522 - ABC transporter substrate-binding protein, at 281,664 to 282,392
SMa0522
SMa0523: SMa0523 - ABC transporter substrate-binding protein, at 282,373 to 282,777
SMa0523
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.698 kb on + strand, within SMa0516 at 279.775 kb on + strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.776 kb on - strand, within SMa0516 at 279.987 kb on + strand at 280.168 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.191 kb on + strand, within SMa0518 at 280.192 kb on - strand, within SMa0518 at 280.373 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.487 kb on + strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.488 kb on - strand at 280.533 kb on + strand at 280.560 kb on + strand at 280.667 kb on - strand at 280.667 kb on - strand at 280.669 kb on - strand at 280.719 kb on + strand at 280.719 kb on + strand at 280.729 kb on - strand at 280.879 kb on + strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.880 kb on - strand, within SMa0520 at 280.950 kb on + strand, within SMa0520 at 280.951 kb on - strand, within SMa0520 at 281.033 kb on - strand, within SMa0520 at 281.033 kb on - strand, within SMa0520 at 281.187 kb on + strand, within SMa0520 at 281.188 kb on - strand, within SMa0520 at 281.273 kb on - strand, within SMa0520 at 281.313 kb on + strand, within SMa0520 at 281.314 kb on - strand, within SMa0520 at 281.623 kb on + strand at 281.735 kb on + strand at 281.793 kb on + strand, within SMa0522 at 281.794 kb on - strand, within SMa0522 at 281.794 kb on - strand, within SMa0522 at 281.844 kb on + strand, within SMa0522 at 281.873 kb on + strand, within SMa0522 at 281.873 kb on + strand, within SMa0522 at 281.874 kb on - strand, within SMa0522 at 281.946 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.006 kb on + strand, within SMa0522 at 282.007 kb on - strand, within SMa0522 at 282.007 kb on - strand, within SMa0522 at 282.007 kb on - strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.093 kb on + strand, within SMa0522 at 282.095 kb on + strand, within SMa0522 at 282.095 kb on + strand, within SMa0522 at 282.251 kb on + strand, within SMa0522 at 282.258 kb on + strand, within SMa0522 at 282.259 kb on - strand, within SMa0522 at 282.269 kb on - strand, within SMa0522 at 282.328 kb on + strand at 282.328 kb on + strand at 282.328 kb on + strand at 282.328 kb on + strand at 282.328 kb on + strand at 282.329 kb on - strand at 282.329 kb on - strand at 282.329 kb on - strand at 282.390 kb on + strand at 282.390 kb on + strand at 282.430 kb on + strand, within SMa0523 at 282.479 kb on + strand, within SMa0523 at 282.510 kb on - strand, within SMa0523 at 282.510 kb on - strand, within SMa0523 at 282.532 kb on - strand, within SMa0523
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 279,698 + SMa0516 0.65 +0.3 279,775 + SMa0516 0.74 +0.2 279,776 - SMa0516 0.74 -0.5 279,776 - SMa0516 0.74 -0.1 279,776 - SMa0516 0.74 -0.1 279,987 + +0.4 280,168 + SMa0518 0.50 -0.1 280,191 + SMa0518 0.57 +0.4 280,191 + SMa0518 0.57 +2.5 280,191 + SMa0518 0.57 -0.1 280,192 - SMa0518 0.57 +0.3 280,373 + +0.8 280,487 + +0.3 280,487 + -0.1 280,487 + -0.4 280,487 + +1.5 280,487 + +0.2 280,487 + -0.4 280,488 - +1.0 280,488 - +0.4 280,488 - -0.1 280,488 - -0.6 280,533 + +0.3 280,560 + -0.3 280,667 - +1.9 280,667 - +1.2 280,669 - +0.9 280,719 + +1.4 280,719 + -1.0 280,729 - +1.9 280,879 + SMa0520 0.22 +0.2 280,880 - SMa0520 0.22 +0.9 280,880 - SMa0520 0.22 +1.3 280,950 + SMa0520 0.30 -2.6 280,951 - SMa0520 0.31 -1.0 281,033 - SMa0520 0.40 -0.5 281,033 - SMa0520 0.40 -0.8 281,187 + SMa0520 0.59 -0.6 281,188 - SMa0520 0.59 -0.5 281,273 - SMa0520 0.69 -1.3 281,313 + SMa0520 0.74 -0.8 281,314 - SMa0520 0.74 -1.1 281,623 + +0.2 281,735 + -0.8 281,793 + SMa0522 0.18 +0.0 281,794 - SMa0522 0.18 -0.9 281,794 - SMa0522 0.18 -0.1 281,844 + SMa0522 0.25 -0.4 281,873 + SMa0522 0.29 +0.3 281,873 + SMa0522 0.29 +0.3 281,874 - SMa0522 0.29 -0.3 281,946 + SMa0522 0.39 -0.3 282,006 + SMa0522 0.47 +1.3 282,006 + SMa0522 0.47 -0.2 282,006 + SMa0522 0.47 +1.0 282,006 + SMa0522 0.47 -0.7 282,007 - SMa0522 0.47 -1.5 282,007 - SMa0522 0.47 +0.6 282,007 - SMa0522 0.47 +0.2 282,093 + SMa0522 0.59 +0.3 282,093 + SMa0522 0.59 +0.5 282,093 + SMa0522 0.59 -0.4 282,093 + SMa0522 0.59 +0.1 282,093 + SMa0522 0.59 -0.2 282,093 + SMa0522 0.59 +0.1 282,093 + SMa0522 0.59 -2.1 282,095 + SMa0522 0.59 -0.2 282,095 + SMa0522 0.59 -0.2 282,251 + SMa0522 0.81 +0.6 282,258 + SMa0522 0.81 +0.0 282,259 - SMa0522 0.82 -0.6 282,269 - SMa0522 0.83 +0.1 282,328 + +0.5 282,328 + +1.3 282,328 + -0.4 282,328 + -0.1 282,328 + -0.1 282,329 - +0.7 282,329 - +0.9 282,329 - +0.5 282,390 + -0.3 282,390 + +0.6 282,430 + SMa0523 0.14 +1.3 282,479 + SMa0523 0.26 -0.2 282,510 - SMa0523 0.34 +1.1 282,510 - SMa0523 0.34 -0.0 282,532 - SMa0523 0.39 +0.4
Or see this region's nucleotide sequence