Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0106 and SMa0108 overlap by 4 nucleotides SMa0108 and SMa0110 overlap by 4 nucleotides SMa0110 and SMa5001 are separated by 41 nucleotides SMa5001 and SMa0112 are separated by 190 nucleotides
SMa0106: SMa0106 - ABC transporter permease, at 55,565 to 56,386
SMa0106
SMa0108: SMa0108 - ABC transporter ATP-binding protein, at 56,383 to 57,297
SMa0108
SMa0110: SMa0110 - ABC transporter ATP-binding protein, at 57,294 to 58,256
SMa0110
SMa5001: SMa5001 - hypothetical protein, at 58,298 to 58,612
SMa5001
SMa0112: SMa0112 - hypothetical protein, at 58,803 to 59,234
SMa0112
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1
2 at 56.497 kb on + strand, within SMa0108 at 56.497 kb on + strand, within SMa0108 at 56.580 kb on - strand, within SMa0108 at 56.840 kb on - strand, within SMa0108 at 56.876 kb on + strand, within SMa0108 at 56.969 kb on + strand, within SMa0108 at 56.970 kb on - strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.139 kb on - strand, within SMa0108 at 57.603 kb on + strand, within SMa0110 at 57.603 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.959 kb on + strand, within SMa0110 at 57.960 kb on - strand, within SMa0110 at 57.960 kb on - strand, within SMa0110 at 58.050 kb on - strand, within SMa0110 at 58.233 kb on - strand at 58.440 kb on + strand, within SMa5001 at 58.472 kb on + strand, within SMa5001 at 58.473 kb on - strand, within SMa5001 at 58.534 kb on + strand, within SMa5001 at 58.534 kb on + strand, within SMa5001 at 58.534 kb on + strand, within SMa5001 at 58.535 kb on - strand, within SMa5001 at 58.536 kb on + strand, within SMa5001 at 58.537 kb on - strand, within SMa5001 at 58.537 kb on - strand, within SMa5001 at 58.537 kb on - strand, within SMa5001 at 58.537 kb on - strand, within SMa5001 at 58.566 kb on + strand, within SMa5001 at 58.567 kb on - strand, within SMa5001 at 58.602 kb on + strand at 58.624 kb on + strand at 58.796 kb on - strand at 58.839 kb on + strand at 58.929 kb on + strand, within SMa0112 at 58.936 kb on - strand, within SMa0112 at 59.033 kb on + strand, within SMa0112 at 59.049 kb on - strand, within SMa0112 at 59.083 kb on + strand, within SMa0112 at 59.168 kb on + strand, within SMa0112 at 59.217 kb on + strand at 59.249 kb on + strand at 59.249 kb on + strand at 59.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 56,497 + SMa0108 0.12 -0.3 56,497 + SMa0108 0.12 +0.1 56,580 - SMa0108 0.22 -0.3 56,840 - SMa0108 0.50 +0.9 56,876 + SMa0108 0.54 +0.1 56,969 + SMa0108 0.64 -0.5 56,970 - SMa0108 0.64 -0.0 57,073 + SMa0108 0.75 -0.2 57,073 + SMa0108 0.75 +0.0 57,136 + SMa0108 0.82 -1.3 57,136 + SMa0108 0.82 -0.5 57,136 + SMa0108 0.82 +0.9 57,137 - SMa0108 0.82 -0.0 57,137 - SMa0108 0.82 +0.0 57,139 - SMa0108 0.83 +0.1 57,603 + SMa0110 0.32 +1.0 57,603 + SMa0110 0.32 +0.8 57,959 + SMa0110 0.69 +0.2 57,959 + SMa0110 0.69 +1.9 57,959 + SMa0110 0.69 +0.0 57,959 + SMa0110 0.69 +0.1 57,960 - SMa0110 0.69 -0.1 57,960 - SMa0110 0.69 +0.2 58,050 - SMa0110 0.79 +1.1 58,233 - -0.6 58,440 + SMa5001 0.45 +1.0 58,472 + SMa5001 0.55 +0.8 58,473 - SMa5001 0.56 -0.1 58,534 + SMa5001 0.75 -0.4 58,534 + SMa5001 0.75 +0.4 58,534 + SMa5001 0.75 -0.5 58,535 - SMa5001 0.75 +0.9 58,536 + SMa5001 0.76 +1.1 58,537 - SMa5001 0.76 -0.1 58,537 - SMa5001 0.76 +0.6 58,537 - SMa5001 0.76 +0.2 58,537 - SMa5001 0.76 -0.3 58,566 + SMa5001 0.85 +1.3 58,567 - SMa5001 0.85 +0.0 58,602 + +1.2 58,624 + -0.6 58,796 - +0.5 58,839 + +0.3 58,929 + SMa0112 0.29 +0.8 58,936 - SMa0112 0.31 -0.5 59,033 + SMa0112 0.53 -0.3 59,049 - SMa0112 0.57 -0.5 59,083 + SMa0112 0.65 -0.2 59,168 + SMa0112 0.84 -0.1 59,217 + -0.0 59,249 + -0.2 59,249 + +0.2 59,250 - -0.5
Or see this region's nucleotide sequence