Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21547

Experiment: 3-octanone 0.456 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21546 and SM_b21547 are separated by 90 nucleotidesSM_b21547 and SM_b21548 are separated by 88 nucleotides SM_b21546: SM_b21546 - two-component sensor histidine kinase, at 1,079,677 to 1,080,828 _b21546 SM_b21547: SM_b21547 - hypothetical protein, at 1,080,919 to 1,081,311 _b21547 SM_b21548: SM_b21548 - hypothetical protein, at 1,081,400 to 1,087,924 _b21548 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -3 -2 -1 0 1at 1080.048 kb on + strand, within SM_b21546at 1080.056 kb on + strand, within SM_b21546at 1080.057 kb on - strand, within SM_b21546at 1080.057 kb on - strand, within SM_b21546at 1080.122 kb on + strand, within SM_b21546at 1080.131 kb on + strand, within SM_b21546at 1080.131 kb on + strand, within SM_b21546at 1080.335 kb on + strand, within SM_b21546at 1080.336 kb on - strand, within SM_b21546at 1080.360 kb on + strand, within SM_b21546at 1080.361 kb on - strand, within SM_b21546at 1080.367 kb on - strand, within SM_b21546at 1080.367 kb on - strand, within SM_b21546at 1080.368 kb on + strand, within SM_b21546at 1080.368 kb on + strand, within SM_b21546at 1080.368 kb on + strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.369 kb on - strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.371 kb on + strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.372 kb on - strand, within SM_b21546at 1080.385 kb on + strand, within SM_b21546at 1080.405 kb on - strand, within SM_b21546at 1080.548 kb on + strand, within SM_b21546at 1080.558 kb on + strand, within SM_b21546at 1080.559 kb on - strand, within SM_b21546at 1080.633 kb on + strand, within SM_b21546at 1080.633 kb on + strand, within SM_b21546at 1080.762 kb on - strandat 1080.762 kb on - strandat 1080.836 kb on + strandat 1080.837 kb on - strandat 1080.887 kb on - strandat 1080.907 kb on + strandat 1080.918 kb on + strandat 1080.939 kb on + strandat 1080.939 kb on + strandat 1080.943 kb on - strandat 1080.946 kb on + strandat 1080.946 kb on + strandat 1080.947 kb on - strandat 1081.026 kb on + strand, within SM_b21547at 1081.027 kb on - strand, within SM_b21547at 1081.266 kb on - strand, within SM_b21547at 1081.271 kb on + strand, within SM_b21547at 1081.271 kb on + strand, within SM_b21547at 1081.272 kb on - strandat 1081.272 kb on - strandat 1081.347 kb on + strandat 1081.394 kb on + strandat 1081.394 kb on + strandat 1081.395 kb on - strandat 1081.436 kb on + strandat 1081.436 kb on + strandat 1081.436 kb on + strandat 1081.436 kb on + strandat 1081.436 kb on + strandat 1081.436 kb on + strandat 1081.436 kb on + strandat 1081.436 kb on + strandat 1081.437 kb on - strandat 1081.437 kb on - strandat 1081.437 kb on - strandat 1081.437 kb on - strandat 1081.607 kb on + strandat 1081.607 kb on + strandat 1081.607 kb on + strandat 1081.607 kb on + strandat 1081.608 kb on - strandat 1081.608 kb on - strandat 1081.608 kb on - strandat 1081.608 kb on - strandat 1081.661 kb on + strandat 1081.661 kb on + strandat 1081.661 kb on + strandat 1081.662 kb on - strandat 1081.662 kb on - strandat 1081.662 kb on - strandat 1081.678 kb on - strandat 1081.750 kb on + strandat 1081.878 kb on - strandat 1081.878 kb on - strandat 1082.045 kb on + strandat 1082.045 kb on + strandat 1082.046 kb on - strandat 1082.066 kb on + strand, within SM_b21548at 1082.067 kb on - strand, within SM_b21548at 1082.141 kb on + strand, within SM_b21548at 1082.142 kb on - strand, within SM_b21548at 1082.151 kb on + strand, within SM_b21548at 1082.287 kb on + strand, within SM_b21548at 1082.288 kb on - strand, within SM_b21548

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM
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1,080,048 + SM_b21546 0.32 -0.6
1,080,056 + SM_b21546 0.33 +0.5
1,080,057 - SM_b21546 0.33 -0.6
1,080,057 - SM_b21546 0.33 -0.5
1,080,122 + SM_b21546 0.39 -0.3
1,080,131 + SM_b21546 0.39 +0.5
1,080,131 + SM_b21546 0.39 -0.3
1,080,335 + SM_b21546 0.57 +0.1
1,080,336 - SM_b21546 0.57 +0.2
1,080,360 + SM_b21546 0.59 +0.7
1,080,361 - SM_b21546 0.59 -0.0
1,080,367 - SM_b21546 0.60 +0.2
1,080,367 - SM_b21546 0.60 -0.9
1,080,368 + SM_b21546 0.60 -0.4
1,080,368 + SM_b21546 0.60 -0.1
1,080,368 + SM_b21546 0.60 -1.3
1,080,369 - SM_b21546 0.60 +0.2
1,080,369 - SM_b21546 0.60 -0.2
1,080,369 - SM_b21546 0.60 +0.5
1,080,369 - SM_b21546 0.60 -0.5
1,080,369 - SM_b21546 0.60 +1.4
1,080,371 + SM_b21546 0.60 +0.4
1,080,371 + SM_b21546 0.60 +0.8
1,080,371 + SM_b21546 0.60 -0.6
1,080,371 + SM_b21546 0.60 +0.0
1,080,372 - SM_b21546 0.60 -0.2
1,080,372 - SM_b21546 0.60 +0.5
1,080,372 - SM_b21546 0.60 -0.1
1,080,372 - SM_b21546 0.60 +0.2
1,080,372 - SM_b21546 0.60 -0.2
1,080,372 - SM_b21546 0.60 +1.6
1,080,372 - SM_b21546 0.60 +1.2
1,080,372 - SM_b21546 0.60 -0.6
1,080,372 - SM_b21546 0.60 -0.0
1,080,385 + SM_b21546 0.61 +0.0
1,080,405 - SM_b21546 0.63 -0.1
1,080,548 + SM_b21546 0.76 +0.8
1,080,558 + SM_b21546 0.76 -0.1
1,080,559 - SM_b21546 0.77 +1.1
1,080,633 + SM_b21546 0.83 -0.3
1,080,633 + SM_b21546 0.83 -0.1
1,080,762 - -1.8
1,080,762 - -0.1
1,080,836 + -0.0
1,080,837 - +0.2
1,080,887 - +1.4
1,080,907 + -0.5
1,080,918 + +0.4
1,080,939 + -0.1
1,080,939 + -0.2
1,080,943 - -0.0
1,080,946 + -0.6
1,080,946 + -0.8
1,080,947 - +1.5
1,081,026 + SM_b21547 0.27 -3.1
1,081,027 - SM_b21547 0.27 -1.2
1,081,266 - SM_b21547 0.88 -0.2
1,081,271 + SM_b21547 0.90 +0.1
1,081,271 + SM_b21547 0.90 -0.4
1,081,272 - -0.2
1,081,272 - -0.0
1,081,347 + +0.5
1,081,394 + -0.2
1,081,394 + -0.9
1,081,395 - +0.1
1,081,436 + -0.1
1,081,436 + -0.2
1,081,436 + +0.2
1,081,436 + +0.1
1,081,436 + +0.5
1,081,436 + +1.1
1,081,436 + -1.2
1,081,436 + +0.8
1,081,437 - -0.7
1,081,437 - -0.1
1,081,437 - -0.2
1,081,437 - -0.3
1,081,607 + -0.1
1,081,607 + -0.4
1,081,607 + -0.0
1,081,607 + +0.9
1,081,608 - +1.0
1,081,608 - +0.6
1,081,608 - +0.3
1,081,608 - +0.2
1,081,661 + +0.8
1,081,661 + -0.1
1,081,661 + +0.1
1,081,662 - -0.5
1,081,662 - +0.4
1,081,662 - +0.2
1,081,678 - +0.1
1,081,750 + -0.1
1,081,878 - -0.3
1,081,878 - -2.0
1,082,045 + +0.3
1,082,045 + +0.1
1,082,046 - -0.3
1,082,066 + SM_b21548 0.10 -0.4
1,082,067 - SM_b21548 0.10 +0.5
1,082,141 + SM_b21548 0.11 -0.8
1,082,142 - SM_b21548 0.11 -0.5
1,082,151 + SM_b21548 0.12 +0.1
1,082,287 + SM_b21548 0.14 -0.1
1,082,288 - SM_b21548 0.14 +0.5

Or see this region's nucleotide sequence