Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21546 and SM_b21547 are separated by 90 nucleotides SM_b21547 and SM_b21548 are separated by 88 nucleotides
SM_b21546: SM_b21546 - two-component sensor histidine kinase, at 1,079,677 to 1,080,828
_b21546
SM_b21547: SM_b21547 - hypothetical protein, at 1,080,919 to 1,081,311
_b21547
SM_b21548: SM_b21548 - hypothetical protein, at 1,081,400 to 1,087,924
_b21548
Position (kb)
1080
1081
1082 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1080.048 kb on + strand, within SM_b21546 at 1080.056 kb on + strand, within SM_b21546 at 1080.057 kb on - strand, within SM_b21546 at 1080.057 kb on - strand, within SM_b21546 at 1080.122 kb on + strand, within SM_b21546 at 1080.131 kb on + strand, within SM_b21546 at 1080.131 kb on + strand, within SM_b21546 at 1080.335 kb on + strand, within SM_b21546 at 1080.336 kb on - strand, within SM_b21546 at 1080.360 kb on + strand, within SM_b21546 at 1080.361 kb on - strand, within SM_b21546 at 1080.367 kb on - strand, within SM_b21546 at 1080.367 kb on - strand, within SM_b21546 at 1080.368 kb on + strand, within SM_b21546 at 1080.368 kb on + strand, within SM_b21546 at 1080.368 kb on + strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.369 kb on - strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.371 kb on + strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.372 kb on - strand, within SM_b21546 at 1080.385 kb on + strand, within SM_b21546 at 1080.405 kb on - strand, within SM_b21546 at 1080.548 kb on + strand, within SM_b21546 at 1080.558 kb on + strand, within SM_b21546 at 1080.559 kb on - strand, within SM_b21546 at 1080.633 kb on + strand, within SM_b21546 at 1080.633 kb on + strand, within SM_b21546 at 1080.762 kb on - strand at 1080.762 kb on - strand at 1080.836 kb on + strand at 1080.837 kb on - strand at 1080.887 kb on - strand at 1080.907 kb on + strand at 1080.918 kb on + strand at 1080.939 kb on + strand at 1080.939 kb on + strand at 1080.943 kb on - strand at 1080.946 kb on + strand at 1080.946 kb on + strand at 1080.947 kb on - strand at 1081.026 kb on + strand, within SM_b21547 at 1081.027 kb on - strand, within SM_b21547 at 1081.266 kb on - strand, within SM_b21547 at 1081.271 kb on + strand, within SM_b21547 at 1081.271 kb on + strand, within SM_b21547 at 1081.272 kb on - strand at 1081.272 kb on - strand at 1081.347 kb on + strand at 1081.394 kb on + strand at 1081.394 kb on + strand at 1081.395 kb on - strand at 1081.436 kb on + strand at 1081.436 kb on + strand at 1081.436 kb on + strand at 1081.436 kb on + strand at 1081.436 kb on + strand at 1081.436 kb on + strand at 1081.436 kb on + strand at 1081.436 kb on + strand at 1081.437 kb on - strand at 1081.437 kb on - strand at 1081.437 kb on - strand at 1081.437 kb on - strand at 1081.607 kb on + strand at 1081.607 kb on + strand at 1081.607 kb on + strand at 1081.607 kb on + strand at 1081.608 kb on - strand at 1081.608 kb on - strand at 1081.608 kb on - strand at 1081.608 kb on - strand at 1081.661 kb on + strand at 1081.661 kb on + strand at 1081.661 kb on + strand at 1081.662 kb on - strand at 1081.662 kb on - strand at 1081.662 kb on - strand at 1081.678 kb on - strand at 1081.750 kb on + strand at 1081.878 kb on - strand at 1081.878 kb on - strand at 1082.045 kb on + strand at 1082.045 kb on + strand at 1082.046 kb on - strand at 1082.066 kb on + strand, within SM_b21548 at 1082.067 kb on - strand, within SM_b21548 at 1082.141 kb on + strand, within SM_b21548 at 1082.142 kb on - strand, within SM_b21548 at 1082.151 kb on + strand, within SM_b21548 at 1082.287 kb on + strand, within SM_b21548 at 1082.288 kb on - strand, within SM_b21548
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 1,080,048 + SM_b21546 0.32 -0.6 1,080,056 + SM_b21546 0.33 +0.5 1,080,057 - SM_b21546 0.33 -0.6 1,080,057 - SM_b21546 0.33 -0.5 1,080,122 + SM_b21546 0.39 -0.3 1,080,131 + SM_b21546 0.39 +0.5 1,080,131 + SM_b21546 0.39 -0.3 1,080,335 + SM_b21546 0.57 +0.1 1,080,336 - SM_b21546 0.57 +0.2 1,080,360 + SM_b21546 0.59 +0.7 1,080,361 - SM_b21546 0.59 -0.0 1,080,367 - SM_b21546 0.60 +0.2 1,080,367 - SM_b21546 0.60 -0.9 1,080,368 + SM_b21546 0.60 -0.4 1,080,368 + SM_b21546 0.60 -0.1 1,080,368 + SM_b21546 0.60 -1.3 1,080,369 - SM_b21546 0.60 +0.2 1,080,369 - SM_b21546 0.60 -0.2 1,080,369 - SM_b21546 0.60 +0.5 1,080,369 - SM_b21546 0.60 -0.5 1,080,369 - SM_b21546 0.60 +1.4 1,080,371 + SM_b21546 0.60 +0.4 1,080,371 + SM_b21546 0.60 +0.8 1,080,371 + SM_b21546 0.60 -0.6 1,080,371 + SM_b21546 0.60 +0.0 1,080,372 - SM_b21546 0.60 -0.2 1,080,372 - SM_b21546 0.60 +0.5 1,080,372 - SM_b21546 0.60 -0.1 1,080,372 - SM_b21546 0.60 +0.2 1,080,372 - SM_b21546 0.60 -0.2 1,080,372 - SM_b21546 0.60 +1.6 1,080,372 - SM_b21546 0.60 +1.2 1,080,372 - SM_b21546 0.60 -0.6 1,080,372 - SM_b21546 0.60 -0.0 1,080,385 + SM_b21546 0.61 +0.0 1,080,405 - SM_b21546 0.63 -0.1 1,080,548 + SM_b21546 0.76 +0.8 1,080,558 + SM_b21546 0.76 -0.1 1,080,559 - SM_b21546 0.77 +1.1 1,080,633 + SM_b21546 0.83 -0.3 1,080,633 + SM_b21546 0.83 -0.1 1,080,762 - -1.8 1,080,762 - -0.1 1,080,836 + -0.0 1,080,837 - +0.2 1,080,887 - +1.4 1,080,907 + -0.5 1,080,918 + +0.4 1,080,939 + -0.1 1,080,939 + -0.2 1,080,943 - -0.0 1,080,946 + -0.6 1,080,946 + -0.8 1,080,947 - +1.5 1,081,026 + SM_b21547 0.27 -3.1 1,081,027 - SM_b21547 0.27 -1.2 1,081,266 - SM_b21547 0.88 -0.2 1,081,271 + SM_b21547 0.90 +0.1 1,081,271 + SM_b21547 0.90 -0.4 1,081,272 - -0.2 1,081,272 - -0.0 1,081,347 + +0.5 1,081,394 + -0.2 1,081,394 + -0.9 1,081,395 - +0.1 1,081,436 + -0.1 1,081,436 + -0.2 1,081,436 + +0.2 1,081,436 + +0.1 1,081,436 + +0.5 1,081,436 + +1.1 1,081,436 + -1.2 1,081,436 + +0.8 1,081,437 - -0.7 1,081,437 - -0.1 1,081,437 - -0.2 1,081,437 - -0.3 1,081,607 + -0.1 1,081,607 + -0.4 1,081,607 + -0.0 1,081,607 + +0.9 1,081,608 - +1.0 1,081,608 - +0.6 1,081,608 - +0.3 1,081,608 - +0.2 1,081,661 + +0.8 1,081,661 + -0.1 1,081,661 + +0.1 1,081,662 - -0.5 1,081,662 - +0.4 1,081,662 - +0.2 1,081,678 - +0.1 1,081,750 + -0.1 1,081,878 - -0.3 1,081,878 - -2.0 1,082,045 + +0.3 1,082,045 + +0.1 1,082,046 - -0.3 1,082,066 + SM_b21548 0.10 -0.4 1,082,067 - SM_b21548 0.10 +0.5 1,082,141 + SM_b21548 0.11 -0.8 1,082,142 - SM_b21548 0.11 -0.5 1,082,151 + SM_b21548 0.12 +0.1 1,082,287 + SM_b21548 0.14 -0.1 1,082,288 - SM_b21548 0.14 +0.5
Or see this region's nucleotide sequence