Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20239 and SM_b20240 are separated by 19 nucleotides SM_b20240 and SM_b20241 overlap by 4 nucleotides
SM_b20239: SM_b20239 - dTDP-glucose 4,6-dehydratase, at 243,200 to 244,240
_b20239
SM_b20240: SM_b20240 - hypothetical protein, at 244,260 to 245,378
_b20240
SM_b20241: SM_b20241 - hypothetical protein, at 245,375 to 246,460
_b20241
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.304 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.567 kb on + strand, within SM_b20239 at 243.568 kb on - strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.684 kb on + strand, within SM_b20239 at 243.685 kb on - strand, within SM_b20239 at 243.777 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.816 kb on + strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.817 kb on - strand, within SM_b20239 at 243.853 kb on - strand, within SM_b20239 at 244.065 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.113 kb on + strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.114 kb on - strand, within SM_b20239 at 244.148 kb on + strand at 244.148 kb on + strand at 244.159 kb on + strand at 244.159 kb on + strand at 244.160 kb on - strand at 244.160 kb on - strand at 244.234 kb on + strand at 244.234 kb on + strand at 244.261 kb on + strand at 244.384 kb on + strand, within SM_b20240 at 244.873 kb on + strand, within SM_b20240 at 245.039 kb on - strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.104 kb on + strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.105 kb on - strand, within SM_b20240 at 245.179 kb on + strand, within SM_b20240 at 245.180 kb on - strand, within SM_b20240 at 245.442 kb on + strand at 245.442 kb on + strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.443 kb on - strand at 245.446 kb on + strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.447 kb on - strand at 245.599 kb on - strand at 245.754 kb on + strand, within SM_b20241 at 245.755 kb on - strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.961 kb on + strand, within SM_b20241 at 245.962 kb on - strand, within SM_b20241 at 245.997 kb on + strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.274 kb on - strand, within SM_b20241 at 246.345 kb on + strand, within SM_b20241 at 246.346 kb on - strand, within SM_b20241
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 243,304 + SM_b20239 0.10 +0.2 243,567 + SM_b20239 0.35 +0.1 243,567 + SM_b20239 0.35 -0.6 243,567 + SM_b20239 0.35 -0.6 243,567 + SM_b20239 0.35 -0.2 243,568 - SM_b20239 0.35 +0.5 243,684 + SM_b20239 0.46 +0.1 243,684 + SM_b20239 0.46 -1.4 243,685 - SM_b20239 0.47 +0.5 243,777 + SM_b20239 0.55 +0.0 243,816 + SM_b20239 0.59 -1.5 243,816 + SM_b20239 0.59 -1.2 243,817 - SM_b20239 0.59 +0.2 243,817 - SM_b20239 0.59 -0.0 243,817 - SM_b20239 0.59 -0.1 243,853 - SM_b20239 0.63 +0.6 244,065 + SM_b20239 0.83 +0.4 244,113 + SM_b20239 0.88 -0.4 244,113 + SM_b20239 0.88 -1.0 244,113 + SM_b20239 0.88 -1.6 244,114 - SM_b20239 0.88 -1.7 244,114 - SM_b20239 0.88 -0.3 244,148 + +0.1 244,148 + +0.9 244,159 + -1.7 244,159 + -0.4 244,160 - -0.0 244,160 - -0.2 244,234 + +1.1 244,234 + -0.5 244,261 + -1.7 244,384 + SM_b20240 0.11 +0.5 244,873 + SM_b20240 0.55 +0.3 245,039 - SM_b20240 0.70 -1.0 245,104 + SM_b20240 0.75 +0.1 245,104 + SM_b20240 0.75 -0.1 245,105 - SM_b20240 0.76 +0.3 245,105 - SM_b20240 0.76 +0.3 245,179 + SM_b20240 0.82 -1.1 245,180 - SM_b20240 0.82 +0.2 245,442 + -0.7 245,442 + +1.2 245,443 - +1.8 245,443 - +0.2 245,443 - +1.6 245,443 - -0.0 245,443 - -1.7 245,443 - +0.5 245,446 + +0.1 245,447 - -1.9 245,447 - -0.6 245,447 - +0.1 245,447 - -0.6 245,599 - -0.5 245,754 + SM_b20241 0.35 -0.1 245,755 - SM_b20241 0.35 -0.1 245,961 + SM_b20241 0.54 +0.6 245,961 + SM_b20241 0.54 -0.6 245,961 + SM_b20241 0.54 -0.5 245,962 - SM_b20241 0.54 -1.2 245,997 + SM_b20241 0.57 -0.1 246,274 - SM_b20241 0.83 -0.1 246,274 - SM_b20241 0.83 -0.1 246,345 + SM_b20241 0.89 -0.1 246,346 - SM_b20241 0.89 -0.3
Or see this region's nucleotide sequence