Experiment: 3-octanone 0.456 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20023 and SM_b20024 are separated by 16 nucleotides SM_b20024 and SM_b20025 are separated by 249 nucleotides
SM_b20023: SM_b20023 - hypothetical protein, at 31,301 to 34,918
_b20023
SM_b20024: SM_b20024 - ribosomal large subunit pseudouridine synthase B, at 34,935 to 35,897
_b20024
SM_b20025: SM_b20025 - hypothetical protein, at 36,147 to 37,124
_b20025
Position (kb)
34
35
36 Strain fitness (log2 ratio)
-1
0
1 at 34.009 kb on - strand, within SM_b20023 at 34.248 kb on + strand, within SM_b20023 at 34.249 kb on - strand, within SM_b20023 at 34.249 kb on - strand, within SM_b20023 at 34.272 kb on + strand, within SM_b20023 at 34.273 kb on - strand, within SM_b20023 at 34.309 kb on - strand, within SM_b20023 at 34.309 kb on - strand, within SM_b20023 at 34.343 kb on + strand, within SM_b20023 at 34.402 kb on - strand, within SM_b20023 at 34.407 kb on + strand, within SM_b20023 at 34.408 kb on - strand, within SM_b20023 at 34.408 kb on - strand, within SM_b20023 at 34.408 kb on - strand, within SM_b20023 at 34.463 kb on + strand, within SM_b20023 at 34.538 kb on + strand, within SM_b20023 at 34.538 kb on + strand, within SM_b20023 at 34.539 kb on - strand, within SM_b20023 at 34.552 kb on - strand, within SM_b20023 at 34.605 kb on + strand at 34.873 kb on + strand at 34.874 kb on - strand at 35.066 kb on + strand, within SM_b20024 at 35.066 kb on + strand, within SM_b20024 at 35.067 kb on - strand, within SM_b20024 at 35.067 kb on - strand, within SM_b20024 at 35.067 kb on - strand, within SM_b20024 at 35.067 kb on - strand, within SM_b20024 at 35.365 kb on - strand, within SM_b20024 at 35.576 kb on - strand, within SM_b20024 at 35.576 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.578 kb on - strand, within SM_b20024 at 35.872 kb on - strand at 36.023 kb on + strand at 36.063 kb on - strand at 36.405 kb on + strand, within SM_b20025 at 36.406 kb on - strand, within SM_b20025 at 36.492 kb on + strand, within SM_b20025 at 36.493 kb on - strand, within SM_b20025 at 36.693 kb on + strand, within SM_b20025 at 36.694 kb on - strand, within SM_b20025 at 36.694 kb on - strand, within SM_b20025 at 36.804 kb on + strand, within SM_b20025
Per-strain Table
Position Strand Gene LocusTag Fraction 3-octanone 0.456 mM remove 34,009 - SM_b20023 0.75 -0.9 34,248 + SM_b20023 0.81 +0.3 34,249 - SM_b20023 0.81 +0.5 34,249 - SM_b20023 0.81 +0.6 34,272 + SM_b20023 0.82 -0.1 34,273 - SM_b20023 0.82 +0.3 34,309 - SM_b20023 0.83 -0.1 34,309 - SM_b20023 0.83 +0.3 34,343 + SM_b20023 0.84 -0.6 34,402 - SM_b20023 0.86 -0.8 34,407 + SM_b20023 0.86 -0.9 34,408 - SM_b20023 0.86 +0.1 34,408 - SM_b20023 0.86 -0.4 34,408 - SM_b20023 0.86 -0.5 34,463 + SM_b20023 0.87 +0.8 34,538 + SM_b20023 0.89 -0.7 34,538 + SM_b20023 0.89 -0.3 34,539 - SM_b20023 0.89 -0.4 34,552 - SM_b20023 0.90 -0.1 34,605 + -0.1 34,873 + -0.0 34,874 - +0.4 35,066 + SM_b20024 0.14 -0.1 35,066 + SM_b20024 0.14 -1.0 35,067 - SM_b20024 0.14 -0.1 35,067 - SM_b20024 0.14 +0.5 35,067 - SM_b20024 0.14 -0.3 35,067 - SM_b20024 0.14 -0.2 35,365 - SM_b20024 0.45 +0.4 35,576 - SM_b20024 0.67 -1.0 35,576 - SM_b20024 0.67 -0.2 35,578 - SM_b20024 0.67 -1.1 35,578 - SM_b20024 0.67 +0.3 35,578 - SM_b20024 0.67 +0.2 35,578 - SM_b20024 0.67 -0.2 35,578 - SM_b20024 0.67 +0.1 35,872 - -0.5 36,023 + -0.1 36,063 - -0.1 36,405 + SM_b20025 0.26 -0.5 36,406 - SM_b20025 0.26 +0.0 36,492 + SM_b20025 0.35 -0.8 36,493 - SM_b20025 0.35 +0.3 36,693 + SM_b20025 0.56 +0.1 36,694 - SM_b20025 0.56 -0.5 36,694 - SM_b20025 0.56 -0.9 36,804 + SM_b20025 0.67 -0.1
Or see this region's nucleotide sequence